Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi704g00105 ATGGGTTCGGCCTCTAGTAGACATGGGTCTCGCCCTTCTAGTCCCAGGGTCAACCGCTTCAGACTATCCTCTCTTCTCTGTGGCACCTCCACCTCCCGTTCTACTTATCAGATGGAAGAACATCCATCTGATCTTCAGGTAAATTCGGCAAGAGATTTTGATGATGGAATTCGGAAAGTCACTGAGGAGTCATCTTTAGCAAGTAGAGAAGATAGAATTAGCTGCAGTCCTCATGCTGAAACTGTAACTTTACCTGATATGAGAACTGAGTTCTACGGGAATACCAATGTTGAAGGTTCTTCCAGAAATGTTGCAACAAGTAGTCAGAGGAAGTGCTTGTCTGAATGTAAGGAGCTAGTCCCTCATCAGGTAAGTGCCGGTCATAGTCGTCATGAATCATATAGTCATAGTAGCAACACAGCTAGTACTTCATTTGTAGAACAGCGGTCTTCAGATCCAGTCTCTGTTAATGTTTCTGCTAACAAGGATGCAGTCAATAATGTTGATGATCCAGTGGTTAGTGGTGTCTCTCAAATCTCTTGCGAGACAATGCATCCAAGGAGTCCAATCCCTCAAGAGCATGGAAATTCCAGTTCTGGTGAAATTTCTGTTGAGAATCATACTGAAAACGAACCTCGTCGCGAGACAATACCTTCAGGGTTAGGTATTCTTGTGTCCAATCGGGAAAGAGGTCAAAATGACAGCGTGCTTCAAGTTGATGTGGTCACAATATCTTCCAACATTTTGTCTGCCAGCAATGCTGATTCCAATGATCATGATGCCAGAAGGAATGGTAGGAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTAGGTGATTCTCCAACCATTGTCTTCTCCACTGGAGGTGCTGATGACCCAGGATCTCAAGATCGATGGCTTGTTGATTTTGGTGGTGATTTCTCAAATGATGGGGTTGGAAGTGCTTCTGGGTATATGGGCAGCAGATTTCACAGATTGCATGAACGAATGCAACACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGTAGCTTTGATGAGATTGGTAGGTGGAATTCTTCCTGTCCATTAGGACTCCATGCAGATGGTATGTGCTCATGCGAGTCTTTCCCCATGGCTGAGGAATCTAGCACTCAAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTCTGTTTGAGGTCTTAGATGAAATCCATCGTCAACCTGGATCACTTTCCCTATCCATGGTCTCTTTCCCGGCACCTGAATCAATTGTTGACTCTTTGCCTCTAAAGTCTCACAAAAAGGTTGATGTAGCTGATGGAGGCAATGATGCTGATGAACAATGTTACATATGCCTGGCGGAGTATGAAGAAGGGGACCAAATACGAGTTCTTCCTTGCAACCATGAGTATCACATGTCTTGTGTCGATAAGTGGCTTAAAGAAATACATGGTGTATGTCCTCTGTGTCGTGGCAATGTTTGTGGAGGGTTCACGGAGTCTTCCGCCGACTCAGAAGTGCAGTCTCATTGA 1530 0.4471 MGSASSRHGSRPSSPRVNRFRLSSLLCGTSTSRSTYQMEEHPSDLQVNSARDFDDGIRKVTEESSLASREDRISCSPHAETVTLPDMRTEFYGNTNVEGSSRNVATSSQRKCLSECKELVPHQVSAGHSRHESYSHSSNTASTSFVEQRSSDPVSVNVSANKDAVNNVDDPVVSGVSQISCETMHPRSPIPQEHGNSSSGEISVENHTENEPRRETIPSGLGILVSNRERGQNDSVLQVDVVTISSNILSASNADSNDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSQDRWLVDFGGDFSNDGVGSASGYMGSRFHRLHERMQHSRSEIWERLRGSFDEIGRWNSSCPLGLHADGMCSCESFPMAEESSTQASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSFPAPESIVDSLPLKSHKKVDVADGGNDADEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSADSEVQSH 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi704g00105 509 SMART ring_2 448 489 IPR001841 -
Gabi704g00105 509 MobiDBLite consensus disorder prediction 186 205 - -
Gabi704g00105 509 MobiDBLite consensus disorder prediction 1 52 - -
Gabi704g00105 509 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 494 IPR013083 -
Gabi704g00105 509 MobiDBLite consensus disorder prediction 1 44 - -
Gabi704g00105 509 MobiDBLite consensus disorder prediction 124 152 - -
Gabi704g00105 509 FunFam Putative RING zinc finger domain superfamily protein 414 495 - -
Gabi704g00105 509 MobiDBLite consensus disorder prediction 186 215 - -
Gabi704g00105 509 Pfam Ring finger domain 447 490 IPR001841 -
Gabi704g00105 509 SUPERFAMILY RING/U-box 435 493 - -
Gabi704g00105 509 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 508 - -
Gabi704g00105 509 ProSiteProfiles Zinc finger RING-type profile. 448 490 IPR001841 -
Gabi704g00105 509 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi704g00105 Gabi-Chr704 911816 916183 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi704g00105 337 494 C3H Transcription Factor Family AT5G45290 48.276 1.16e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi704g00105 - - gmx:100783604 818.535