LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi704g00104	ATGGGTTCGGCCTCTAGTAGACATGGGTCTCGCCCTTCTAGTCCCAGGGTCAACCGCTTCAGACTATCCTCTCTTCTCTGTGGCACCTCCACCTCCCGTTCTACTTATCAGATGGAAGAACATCCATCTGATCTTCAGGTAAATTCGGCAAGAGATTTTGATGATGGAATTCGGAAAGTCACTGAGGAGTCATCTTTAGCAAGTAGAGAAGATAGAATTAGCTGCAGTCCTCATGCTGAAACTGTAACTTTACCTGATATGAGAACTGAGTTCTACGGGAATACCAATGTTGAAGGTTCTTCCAGAAATGTTGCAACAAGTAGTCAGAGGAAGTGCTTGTCTGAATGTAAGGAGCTAGTCCCTCATCAGGTAAGTGCCGGTCATAGTCGTCATGAATCATATAGTCATAGTAGCAACACAGCTAGTACTTCATTTGTAGAACAGCGGTCTTCAGATCCAGTCTCTGTTAATGTTTCTGCTAACAAGGATGCAGTCAATAATGTTGATGATCCAGTGGTTAGTGGTGTCTCTCAAATCTCTTGCGAGACAATGCATCCAAGGAGTCCAATCCCTCAAGAGCATGGAAATTCCAGTTCTGGTGAAATTTCTGTTGAGAATCATACTGGTGCATTCATATCTATCCAGAGTTCTTCTTCGAATCCTGTTGCTCAAGTTCCCAATTTAACACCAACTTCTCGATTGCCAGAAAACGAACCTCGTCGCGAGACAATACCTTCAGGGTTAGGTATTCTTGTGTCCAATCGGGAAAGAGGTCAAAATGACAGCGTGCTTCAAGTTGATGTGGTCACAATATCTTCCAACATTTTGTCTGCCAGCAATGCTGATTCCAATGATCATGATGCCAGAAGGAATGGTAGGAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTAGGTGATTCTCCAACCATTGTCTTCTCCACTGGAGGTGCTGATGACCCAGGATCTCAAGATCGATGGCTTGTTGATTTTGGTGGTGATTTCTCAAATGATGGGGTTGGAAGTGCTTCTGGGTATATGGGCAGCAGATTTCACAGATTGCATGAACGAATGCAACACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGTAGCTTTGATGAGATTGGTAGGTGGAATTCTTCCTGTCCATTAGGACTCCATGCAGATGGTATGTGCTCATGCGAGTCTTTCCCCATGGCTGAGGAATCTAGCACTCAAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTCTGTTTGAGGTCTTAGATGAAATCCATCGTCAACCTGGATCACTTTCCCTATCCATGGTCTCTTTCCCGGCACCTGAATCAATTGTTGACTCTTTGCCTCTAAAGTCTCACAAAAAGGTTGATGTAGCTGATGGAGGCAATGATGCTGATGAACAATGTTACATATGCCTGGCGGAGTATGAAGAAGGGGACCAAATACGAGTTCTTCCTTGCAACCATGAGTATCACATGTCTTGTGTCGATAAGTGGCTTAAAGAAATACATGGTGTATGTCCTCTGTGTCGTGGCAATGTTTGTGGAGGGTTCACGGAGTCTTCCGCCGACTCAGAAGTGCAGTCTCATTGA	1611	0.4457	MGSASSRHGSRPSSPRVNRFRLSSLLCGTSTSRSTYQMEEHPSDLQVNSARDFDDGIRKVTEESSLASREDRISCSPHAETVTLPDMRTEFYGNTNVEGSSRNVATSSQRKCLSECKELVPHQVSAGHSRHESYSHSSNTASTSFVEQRSSDPVSVNVSANKDAVNNVDDPVVSGVSQISCETMHPRSPIPQEHGNSSSGEISVENHTGAFISIQSSSSNPVAQVPNLTPTSRLPENEPRRETIPSGLGILVSNRERGQNDSVLQVDVVTISSNILSASNADSNDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSQDRWLVDFGGDFSNDGVGSASGYMGSRFHRLHERMQHSRSEIWERLRGSFDEIGRWNSSCPLGLHADGMCSCESFPMAEESSTQASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSFPAPESIVDSLPLKSHKKVDVADGGNDADEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSADSEVQSH	536

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi704g00104	536	MobiDBLite	consensus disorder prediction	1	22	-	-
	Gabi704g00104	536	MobiDBLite	consensus disorder prediction	183	203	-	-
	Gabi704g00104	536	FunFam	Putative RING zinc finger domain superfamily protein	441	522	-	-
	Gabi704g00104	536	SMART	ring_2	475	516	IPR001841	-
	Gabi704g00104	536	MobiDBLite	consensus disorder prediction	216	234	-	-
	Gabi704g00104	536	MobiDBLite	consensus disorder prediction	124	152	-	-
	Gabi704g00104	536	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	440	521	IPR013083	-
	Gabi704g00104	536	MobiDBLite	consensus disorder prediction	216	242	-	-
	Gabi704g00104	536	Pfam	Ring finger domain	474	517	IPR001841	-
	Gabi704g00104	536	PANTHER	RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED	1	535	-	-
	Gabi704g00104	536	SUPERFAMILY	RING/U-box	462	520	-	-
	Gabi704g00104	536	ProSiteProfiles	Zinc finger RING-type profile.	475	517	IPR001841	-
	Gabi704g00104	536	MobiDBLite	consensus disorder prediction	128	152	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi704g00104	Gabi-Chr704	911816	916183	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi704g00104	364	521	C3H Transcription Factor Family	AT5G45290	48.276	1.81e-40	152