Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi704g00102 ATGTGTGTGCAGGACGGTGAGCAAGTTGCTCAAGATATGGAGAATCTTGATAACAGAAGGATGTCATGGCCTCTGCATTGTGATCTCTTGCATGCCAACCGCGAAAAAGCCTCTTCTTTTAGAACCCCCACTGATCAGATGACTTCTGAAAATTGCGTCCCTATGGAAAGCATATGTGAGGATACAGAGTTTGCAGACAAAAAACAGAACCTGATGAACTTTGTCCCTTCTCTTCGGTCTGGAGAGTGGTCTCATATTGGAGAACGCCCTTACATGGAGGATACCCACATTTGCATTGGAGACTTGGCGAAGAAATTTGGTTATGATGTTCACAGTGAGGAAGCTGTTTCGCTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCGCAATTTGTTCGTGATCATCTGCCGAGGGTGATTGTTGAAGATGCTGACTTTCCTTTGGAACTTGAGAAGGTGGTCACAAAATCATTTTTGAAGACAGATGCAGAGTTTGAAAAAACATGCTCTATTGAGTCTTCCCAGTCTTCTGGTACAACTGCACTGACTGCAATTATATTTGGAAGGTCTTTACTTGTAGCCAATGCTGGAGACTGCAGGGCAGTGTTGTCCCGTTGTGGAGTGGCTATAGAAATGTCCAAAGATCATAGGCCCTTGTGTATTAAAGAAAGGATGCGGATTGAGTCCCTTGGTGGATTCATTGATGATGGTTACCTGAATGGCCAGTTAGGAGTTACACGTGCTCTTGGTGACTGGCATCTTGAAGGAATGAAGGGAATGAGTGGAAGAGTTGGACCACTGAGTGCTGAGCCTGAACTTAAATTGATCACATTAACCAAAGAAGATGAGTTCTTGATAATTGGCAGTGATGGAATCTGGGATGTTTTTCGTAGCCAAAATGCTGTAGATTATGCTCGGAGGAGGCTTCAAGAGCATAATGATGTGAAACAGTGTTGCAAGGAACTAATAGGGGAAGCAATGAAGAGAGGAGCAACTGACAACTTGACAGTGGTGATGGTATGTTTTCACTCAGATCCACCACCACCTGTGGTTGTTGAAAGGCCTAGAGTCAGGAGAAGCATATCTGCTGAGGGACTTCAGAGTCTTAAATACCTGCTTCAAGGATAG 1134 0.4427 MCVQDGEQVAQDMENLDNRRMSWPLHCDLLHANREKASSFRTPTDQMTSENCVPMESICEDTEFADKKQNLMNFVPSLRSGEWSHIGERPYMEDTHICIGDLAKKFGYDVHSEEAVSLYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTKSFLKTDAEFEKTCSIESSQSSGTTALTAIIFGRSLLVANAGDCRAVLSRCGVAIEMSKDHRPLCIKERMRIESLGGFIDDGYLNGQLGVTRALGDWHLEGMKGMSGRVGPLSAEPELKLITLTKEDEFLIIGSDGIWDVFRSQNAVDYARRRLQEHNDVKQCCKELIGEAMKRGATDNLTVVMVCFHSDPPPPVVVERPRVRRSISAEGLQSLKYLLQG 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi704g00102 377 SMART PP2C_4 69 342 IPR001932 -
Gabi704g00102 377 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Gabi704g00102 377 Gene3D - 60 347 IPR036457 -
Gabi704g00102 377 CDD PP2Cc 79 344 IPR001932 -
Gabi704g00102 377 ProSiteProfiles PPM-type phosphatase domain profile. 79 344 IPR001932 -
Gabi704g00102 377 FunFam Probable protein phosphatase 2C 22 62 347 - -
Gabi704g00102 377 SUPERFAMILY PP2C-like 71 345 IPR036457 -
Gabi704g00102 377 Pfam Protein phosphatase 2C 91 336 IPR001932 -
Gabi704g00102 377 PANTHER PROTEIN PHOSPHATASE 2C 66 342 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi704g00102 Gabi-Chr704 894567 897961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi704g00102 58 377 PP2C-type Phosphatase Gene Family AT2G25620 59.133 1.74e-130 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Gabi704g00102 PP2C 8.7e-67 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi704g00102 K14803 - gmx:100782648 612.453