Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi704g00098 ATGGGAAGCAATGGTACTGAGAAGATCCCTAGCAATAACAACACTGAAAGTTCAGAAACCACTATTGAGATAAAGATTAAAACATTGGATTCACAAACTTACACCCTAAGAGTGGATAAACAGATGCCAGTCCCTGCTCTAAAAGAACAGATTGCTTCTGTAACTGGAGTGTTATCAGAACAGCAGCGCTTAATTTGCCAAGGAAAAGTTCTAAAGGATGACCAACTCCTGTCAGCCTACCATGTTGAAGATGGTCACACCTTGCATATGGTTGTAAGGCAACCTGGTCTACCACCACCAGGAAGTTTGCCCAATCATTCAGTGACTGAACCAAATTCAAGCACAAGCCATGGCCACAGTAATCAAAATCAAGTAGCCCCTGGTGTATTTGTTGAAACTTTCAACGTGCCCATTCAGGGTGATGGAGTTCCTCCTGAAATCAATAGGATTGTTTCTGCTGTTCTAGGATCTATTGGACTTTCAAATTTTGCAAGTGGTGGTGAAGGGATTGATGTCAGGGAACATGAGTTCCAAGGCTTTGGAAGAAATTCGGGTCCTATTGGAATATCTCATTCATCTCATCCTCAATCTGAACAAGCTGGTTTGCGGATTTTGTCTGATAGATCGCGTAATACTTTTGGACTTCCAGCAGCAGTTTCTCTAGGATCTTTGCAGCCTCCTGTTATTCCTGATTCTTTAACAACTTTGTCCCAATACCTAAGTCACATAAGCCATGAATTTGATGCAATTGTCAGGGAAGGGGGGAATAATGTCCAAGCAGCTGAGGCTCATACGAATGAAGAAATGGGGTCTGTTTCATCACGTATGAGTTCAACACCAGAAGGGCTTTCATCACCCGCATCCTTGGCAGAAGTCTTGCTTTCTACCAGACAAATGATCATTGAACAAGCTGGGGAGTGCCTACTTCAACTTGCAAGACAGCTGGAGAATCAAGCAAATGTAACTGATCCCTTGCTGCGGTCAAGCACTCAGTCTTGGGCTATGAGGACTGGAGTTTTGTTTTATAACCTTGGTGCATTTTTACTTGAGCTTGGTCGCACAACCATGACATTGCGTTTGGGTCAAACGCCGTCTGAAGCCATAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCATCTGGTCCTAACCATATCATGGTTCAGCCTCTTCCTTTTCAACCCGGAGCAAGCTTTGGTGCTGTCCCTGTGGGAGCTGCACAATCTATCCCAAGCTTTGGTAGTGGACTTAGCTCAAGTTTTTTCCCAAGGCGTATTGATATACAGATACGACGAGCAACCACACCCAATGACAATCAAGAAGAGCGGGGTGACACACAATCTGCTTCAGTACAACGAAATCCAGGTGAAAGTTCCGTTAATCAAGCAACCTCTAGGCGTCCGGATACATCTATTGCTGGGGAACCAGGAGTACGGATAGTGCCAATTAGAACCATGGTTGCAGCTGTACCAGGTCCCTTAGGTCGTCCGCCTTCAGAACCATCTGGTAATTCTATAGGGCTTTACTATCCAGTTCTTGGTAGATTTCAAAATATATCTTCCGGGCATGCAAATAGTGAACAGGGATCTCAACCACCAAGTCAGCATCATGCTGTGCAACAGTCAACTCCTGAATCCACTTTGCAAAGGCAGAGCATGGAGGATTCTGCAAGGAATGGATCCTTACCAACTCCAAGCACGAGGCAAGAGCCATCAAATTCTCGTGTTGTGAATATCAATATTATGGCAGCTGGTGGGTCCCAAAACAACCAAGAACCTGAGAGACAGATACCTAGCAATGTACTTCAGTTTTTAAGGGCACTCTTTCCTGGTGGAGAAATTCATGTCGAAGATTCAAATTTACAAGGAACAACTGCGGGTTCTACCTCAGGGCATGCTGCAACATCAAGGGGTGCTGTCCAGTTATCAACAGAAGCAGAACCCAGCGTTAGCGATGAAGGAATATTTTTGTCTAATTTACTCCGCGAGATCATGCCTGTCATATCTCAACAATTAGGATCTGAGGGAAATCCTTCTGAAGATCAAATGGCTCAAGATTCTTCGACCCAGGTTGAAACTGATGTTGGGACTTCGCGCAGACAGAGTGATTCTGAACCAAGCCCCCCAAATCCAAAACGTCAAAAGATGGAGTGA 2151 0.4472 MGSNGTEKIPSNNNTESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSEQQRLICQGKVLKDDQLLSAYHVEDGHTLHMVVRQPGLPPPGSLPNHSVTEPNSSTSHGHSNQNQVAPGVFVETFNVPIQGDGVPPEINRIVSAVLGSIGLSNFASGGEGIDVREHEFQGFGRNSGPIGISHSSHPQSEQAGLRILSDRSRNTFGLPAAVSLGSLQPPVIPDSLTTLSQYLSHISHEFDAIVREGGNNVQAAEAHTNEEMGSVSSRMSSTPEGLSSPASLAEVLLSTRQMIIEQAGECLLQLARQLENQANVTDPLLRSSTQSWAMRTGVLFYNLGAFLLELGRTTMTLRLGQTPSEAIVNGGPAVFISPSGPNHIMVQPLPFQPGASFGAVPVGAAQSIPSFGSGLSSSFFPRRIDIQIRRATTPNDNQEERGDTQSASVQRNPGESSVNQATSRRPDTSIAGEPGVRIVPIRTMVAAVPGPLGRPPSEPSGNSIGLYYPVLGRFQNISSGHANSEQGSQPPSQHHAVQQSTPESTLQRQSMEDSARNGSLPTPSTRQEPSNSRVVNINIMAAGGSQNNQEPERQIPSNVLQFLRALFPGGEIHVEDSNLQGTTAGSTSGHAATSRGAVQLSTEAEPSVSDEGIFLSNLLREIMPVISQQLGSEGNPSEDQMAQDSSTQVETDVGTSRRQSDSEPSPPNPKRQKME 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi704g00098 716 Gene3D - 14 119 - -
Gabi704g00098 716 MobiDBLite consensus disorder prediction 94 123 - -
Gabi704g00098 716 SUPERFAMILY Ubiquitin-like 11 111 IPR029071 -
Gabi704g00098 716 MobiDBLite consensus disorder prediction 106 123 - -
Gabi704g00098 716 MobiDBLite consensus disorder prediction 264 284 - -
Gabi704g00098 716 MobiDBLite consensus disorder prediction 430 477 - -
Gabi704g00098 716 MobiDBLite consensus disorder prediction 617 649 - -
Gabi704g00098 716 MobiDBLite consensus disorder prediction 617 647 - -
Gabi704g00098 716 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Gabi704g00098 716 MobiDBLite consensus disorder prediction 519 573 - -
Gabi704g00098 716 MobiDBLite consensus disorder prediction 431 468 - -
Gabi704g00098 716 MobiDBLite consensus disorder prediction 669 716 - -
Gabi704g00098 716 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 716 - -
Gabi704g00098 716 SMART ubq_7 22 93 IPR000626 GO:0005515
Gabi704g00098 716 PRINTS Ubiquitin signature 32 52 IPR019956 -
Gabi704g00098 716 PRINTS Ubiquitin signature 74 95 IPR019956 -
Gabi704g00098 716 PRINTS Ubiquitin signature 53 73 IPR019956 -
Gabi704g00098 716 FunFam Large proline-rich protein BAG6 14 107 - -
Gabi704g00098 716 MobiDBLite consensus disorder prediction 669 708 - -
Gabi704g00098 716 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi704g00098 Gabi-Chr704 867615 881626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi704g00098 22 96 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.333 2.15e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi704g00098 K23390 - gmx:100783070 1115.91