Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi704g00087 ATGGGGAAGAAAAAGAAGCAAGTAGGAGAAAGAAGGGAAGATGGTGGAAATCAAAGCAAAGTGGGAGATAGCAGCCCCAAAGAATATGACAATGATACTATGGTATTTATATCCATGTCTCAAGAGTTGAAGGATGAAGGGAACAAGCTGTTCCAAAAGAGGGACCTTGAAGGAGCTATACTAAAATATGAAAAAGCCCTCAAATTGCTTCCAAGAAATCATAATGATGTTTCCCATCTGCGGAGTAACATGGCTGCATGTTACATGCAGATGGGACTTGGTGAGTACCCAAGGGCAATTCATGAATGCAATTTGGCTCTTGAAGTAACACCAAAATATAGTAAAGCTTTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGACTGGATTTAGCTCTGAGAGATGTTAGTACTGTTTTGAAGATGGAGCCAAATAATCTAATGGCATTGGAGATCTCAGAAAGGGTGAAAACTGTGCTTGAGGAGAAAGGATTAAGAGTAAACGATACAGTAATTGAGTTGCCTCCAGATTATGTTGAACCTCCTAATGCTTTGCCTCCAGAAAAGGTAGTGAAAGAGAAGACACGCAAGAAGAAGAGCAATAAAGAGGAAGAGAAGGCTCCTGATAACAAAATTTTAGAAAAGCAAGCCAAGGAGAATTTTGAAGAGAAGGCTGAGGAAAGTTTTGTAGTTGTAGAGGAAAAAAGTAATGGCAAAAGGGAAGATGTTCCTAAGAAAACAGTAAAACTTATTTTTGGTGAGGATATAAGATGTGCTGAATTGAATGTTAATTGTAGCCTGTTGCAGTTAAGAGAAGTTATTTATGACCGATTCCCAAGCCTAGGAGCTGTACTTGTCAAATACAGGGACCAAGAAGGTGATTTGGTCACAATCACTTCCGATGATGAACTAAGATGGGCTGAAACAGGATCTCATGGTTCTATCCGGCTTTACATAGTAGAAGCTACTCCTGAGCAGGATCCATTTTTTGAGACACTTAAAGGAAAGGAGGGAGAAATGGTTGGCCTTAATAATGCACTTGAGAATGGTTGTGTGGTAAAGGCAAAGGAAGTTATTAGCTCGTCTTGCATTGAGGATTGGATAATTCGGTTTGCCAAACTGTTCAAGAACCACGTTGGGTTCGAATCTGACAGATATTTGGATTTTCATGAACTTGGGATGAAGCTCTATTCTGAGGCTTTGGAGGAGACAGTTACAAGTGAAGAAGCACAAGGCCTATTTGACATGGCTGGAGATAAGTTCCAAGAGATGACTGCTCTAGCATTGTTCAACTGGGGAAATGTGCATATGTCTAGAGCAAGGAAGAAAGTATATTTCACAGAAGATTCTTCTAAAGAGCATCTACGTGAACAAATAAAAAGTTCATATGAATGGGCACAGAAAGAATATGCAAAAGCAGGAGAAAAATATGAAGCAGCCGTTAAAATTAAGTCAGATTTTTATGAAGGCTTCCTAGCACTAGGGCAACAGCAGTTTGAGCAAGCAAAACTCTCTTGGTATCATGCACTCAGTGCTAATGTAGATTTAGGAACATGGCCGTCCACTGAGGTTCTTCAGCTTTACAACAATGCTGAGGATAACATGGAGAAAGGAATGCAGATATGGGAAGAATCAGAAGAGCAGTACAGTAAAACCTCTAATTCAAAGGATGTTATATTACATTTGCAGAACTTGGGGTTGGATGGGCTGTTTAAAAATATATCGTCAGATGAAATTGCAGCGCAGGAGGCAAATATGAGGTCTCAAATAAATCTCCTATGGGGTACCATGCTATATGAACGCTCAATTGCAGAATTCAAATTAGGGCTACCGGTGTGGCATGAATCTCTGGAAGTTGCAATTGAGAAGTTTGAACTTGCTGGAGCTTCTCCCACAGATATAGCTGTAATGTTGAAGAACCACTGTTCAAATAATACTGCAGTAGATGGTCTAGGATTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTACAAAGCTAAAAAGTGGCCAAGTGGAGTTCCATCATTTCGTTTGGAACCCTTATTTAGAAGGCGAGTTTCAAAAATTTATCATGCCTTTGAGCTTGTATGA 2100 0.3971 MGKKKKQVGERREDGGNQSKVGDSSPKEYDNDTMVFISMSQELKDEGNKLFQKRDLEGAILKYEKALKLLPRNHNDVSHLRSNMAACYMQMGLGEYPRAIHECNLALEVTPKYSKALLKRARCYEALNRLDLALRDVSTVLKMEPNNLMALEISERVKTVLEEKGLRVNDTVIELPPDYVEPPNALPPEKVVKEKTRKKKSNKEEEKAPDNKILEKQAKENFEEKAEESFVVVEEKSNGKREDVPKKTVKLIFGEDIRCAELNVNCSLLQLREVIYDRFPSLGAVLVKYRDQEGDLVTITSDDELRWAETGSHGSIRLYIVEATPEQDPFFETLKGKEGEMVGLNNALENGCVVKAKEVISSSCIEDWIIRFAKLFKNHVGFESDRYLDFHELGMKLYSEALEETVTSEEAQGLFDMAGDKFQEMTALALFNWGNVHMSRARKKVYFTEDSSKEHLREQIKSSYEWAQKEYAKAGEKYEAAVKIKSDFYEGFLALGQQQFEQAKLSWYHALSANVDLGTWPSTEVLQLYNNAEDNMEKGMQIWEESEEQYSKTSNSKDVILHLQNLGLDGLFKNISSDEIAAQEANMRSQINLLWGTMLYERSIAEFKLGLPVWHESLEVAIEKFELAGASPTDIAVMLKNHCSNNTAVDGLGFKIDEIVQAWNEMYKAKKWPSGVPSFRLEPLFRRRVSKIYHAFELV 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi704g00087 699 CDD PB1 248 320 - -
Gabi704g00087 699 Gene3D Tetratricopeptide repeat domain 38 167 IPR011990 GO:0005515
Gabi704g00087 699 MobiDBLite consensus disorder prediction 193 212 - -
Gabi704g00087 699 SUPERFAMILY CAD & PB1 domains 247 332 - -
Gabi704g00087 699 Pfam PB1 domain 248 321 IPR000270 GO:0005515
Gabi704g00087 699 ProSiteProfiles PB1 domain profile. 246 323 IPR000270 GO:0005515
Gabi704g00087 699 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Gabi704g00087 699 SMART tpr_5 114 147 IPR019734 GO:0005515
Gabi704g00087 699 SMART tpr_5 78 113 IPR019734 GO:0005515
Gabi704g00087 699 SMART tpr_5 40 73 IPR019734 GO:0005515
Gabi704g00087 699 Gene3D - 246 326 - -
Gabi704g00087 699 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Gabi704g00087 699 SMART PB1_new 246 323 IPR000270 GO:0005515
Gabi704g00087 699 MobiDBLite consensus disorder prediction 1 18 - -
Gabi704g00087 699 PANTHER PROTEIN CLMP1 3 697 IPR044517 -
Gabi704g00087 699 MobiDBLite consensus disorder prediction 1 30 - -
Gabi704g00087 699 SUPERFAMILY TPR-like 40 153 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi704g00087 Gabi-Chr704 735262 738984 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi704g00087 23 147 Calmodulin-binding Proteins AT3G25230 29.851 6.41e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi704g00087 K26538 - gmx:100807387 1147.5