Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi704g00054 ATGCTTCAAACCTCAAAATTCAACACTCCACACACTGCTGAGGTTCCAACCATGTCAACAGAACACTTGACTAATGGCGAACCCGAATCCCTCATCGTACAACCCTTGTTGTCTTCGCAAAGATCCATTGTCAACTCCACGTCCCAGGTTGCCATTGTTGGCGCCAATGTCTGCCCTATTGAGAGCCTTGATTATGAGATTTTTGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGGAAGGTTCAGATATTCCAGTACATATTGATGAAGTGGCTCTTGTGCTTTCTTATTGGTATGATCGTTAGCCTTGTTGGGTTTTGCAACAATCTCGCTGTGGAGAATCTTGCTGGCGTGAAGTTTGTGATTACATCCAATATGATGTTGGAGAAGAGGTTTCTTTTGGCCTTTGTTACATTTTTTGCTTCAAATTTGAGTCTCACGCTTTTTTCCTCTATAATCACGGCTTTGATAGCACCTGCTGCTACCGGTTCAGGTATACCGGAGGTGAAAGCTTACCTTAACGGTGTAGATGCTCCTGGAATATTTACCCTACCAACTCTGTTCGTTAAGATTATCGGAAGCATTACGGCAGTTTCATCATCTCTTCTTATTGGGAAAGCAGGGCCTATGGTGCATACAGGTGCATGTGTGGCATCATTGTTGGGTCAGGGTGGGTCAAAGAGATATGGGTTAACGTGGAAATGGTTACGGTTTTTTAAAAATGATCGAGATCGACGAGATCTAATAACATGTGGATCAGCAGCTGGAATTGCTGCTGCCTTTCGTGCCCCTGTTGGTGGGGTGTTGTTTGCTCTTGAAGAGATGACTTCTTGGTGGAGGACTGCCCTTCTGTGGAGAACTTTCTTCACAGCAGCAATAGTTGCAATTTTTCTTCGTGCTATGATTGATGTATGTTTAAGTGGTAAATGTGGGTTATTTGGTAAAGGGGGACTGATAATGTTTGATGCTTATTCAGCAAGTATTTCATATCATGTGGCAGATGTTCCTCCTGTGTTTATTCTTGGTGTTATTGGGGGGATACTTGGAAGCTTCTATAATTTTTTGTTGAACAAAGTTCTTCGCATATACAATTTTATCAATCAGAAAGGCACCATTTGGAAAATTTTGCTTGCTTGTGTAATCTCCATTTTTACCTCCTGTCTTCTTTTTGGTTTGCCATGGCTTGCAACTTGCCGACCTTGTCCACCTGATGCAACTGAGTCTTGCCCTACAATAGGTCGGTCTGGTATCTACAAGAAATTCCAATGTCCACCTAATCACTACAATGATCTTGCCAGCCTCATTTTTAACACAAATGATGATGCTATCAGAAATCTATTTAGCAAGAACACCGACGATGAGTTTGAGTATTCTTCAATGTTCATCTTTTTCATCACATGCTTTTTTTTAAGTATCTTTAGCTTTGGAGTTGTTGCTCCGGTCGGTCTTTTTGTGCCACTTATTGTGACTGGCGCATCTTATGGACGCTTTGTTGGAATGTTGGTTGGCAAACAGTCCAATCTTAACCATGGCCTTTATGCTGTACTTGGCGCTGCTTCCTTTCTTGGTGGATCTATGAGGACAACAGTTTCTCTCTGTGTTATTATTCTTGAACTGACCAATAACTTGTTATTGCTACCCCTAATCATGATGGTGCTTTTGGTATCTAAGACTGTAGCAGATGCTTTCAATCAAAATATATATGACCTTATAATGAAAGCCAAGGGTTTGCCTTATTTAGAAACTCATGCGGAACCATATATGAGGCAGCTAACAGTGGGAGATGTAGTCACTGGCCCACTTCAGATTTTCAATGGCATTGAGAAGTTTTATTCGGTATAG 1848 0.4167 MLQTSKFNTPHTAEVPTMSTEHLTNGEPESLIVQPLLSSQRSIVNSTSQVAIVGANVCPIESLDYEIFENEFFKQDWRSRGKVQIFQYILMKWLLCFLIGMIVSLVGFCNNLAVENLAGVKFVITSNMMLEKRFLLAFVTFFASNLSLTLFSSIITALIAPAATGSGIPEVKAYLNGVDAPGIFTLPTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVASLLGQGGSKRYGLTWKWLRFFKNDRDRRDLITCGSAAGIAAAFRAPVGGVLFALEEMTSWWRTALLWRTFFTAAIVAIFLRAMIDVCLSGKCGLFGKGGLIMFDAYSASISYHVADVPPVFILGVIGGILGSFYNFLLNKVLRIYNFINQKGTIWKILLACVISIFTSCLLFGLPWLATCRPCPPDATESCPTIGRSGIYKKFQCPPNHYNDLASLIFNTNDDAIRNLFSKNTDDEFEYSSMFIFFITCFFLSIFSFGVVAPVGLFVPLIVTGASYGRFVGMLVGKQSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLLVSKTVADAFNQNIYDLIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQIFNGIEKFYSV 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi704g00054 615 SUPERFAMILY Clc chloride channel 70 584 IPR014743 -
Gabi704g00054 615 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 39 612 - -
Gabi704g00054 615 MobiDBLite consensus disorder prediction 1 22 - -
Gabi704g00054 615 PRINTS Plant CLC chloride channel signature 291 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi704g00054 615 PRINTS Plant CLC chloride channel signature 309 316 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi704g00054 615 PRINTS Plant CLC chloride channel signature 277 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi704g00054 615 PRINTS Plant CLC chloride channel signature 433 449 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi704g00054 615 PRINTS Plant CLC chloride channel signature 66 74 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi704g00054 615 Pfam Voltage gated chloride channel 149 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi704g00054 615 FunFam Chloride channel ClC3 84 401 - -
Gabi704g00054 615 PRINTS Chloride channel signature 481 501 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi704g00054 615 PRINTS Chloride channel signature 192 211 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi704g00054 615 PRINTS Chloride channel signature 256 275 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi704g00054 615 PRINTS Chloride channel signature 531 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi704g00054 615 PRINTS Chloride channel signature 569 583 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi704g00054 615 PRINTS Chloride channel signature 161 178 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi704g00054 615 PRINTS Chloride channel signature 513 529 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi704g00054 615 Gene3D Clc chloride channel 84 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi704g00054 Gabi-Chr704 505049 509975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi704g00054 23 615 Ion Channels AT5G33280 77.909 0.0 925
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi704g00054 K05016 - gmx:100817901 1020.38