Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi704g00052 ATGGCTGCTATCACTGCGTTGTTCTTGGTGCTATTACTGCAATTGTCAACAGTTTTTGGCTCTGCAGTTTTCTTTCAGTCAAAGGGTTGTGGCACTAATTGGGTAGCCTATTCATATTCTAGTCGTGGTCAGGACCTATTCTACATAAATGGGAATGTAGTAAATAAAGTTGCTTTCTGTAAGGCCCTCCAATTGTATATTGCAAACGGTTGCGATGTGAAGGACTACTTTGGAAGTAACAACTGTGCGTTGGATGTCTCTAGTGTGAATTTACCTTCAAAGGCAGGGAGGAAACTTCTGCAGAAGGATTTAAGCAATAAATCTACATCACAAGGAGTTTCTCAGCCTCTGTCAAGCGACAAAGTTGGTATTTTTGCAGGTGGGGCTTTGTTGGTATGTTGTGTTGTTCTTTGTCCTTGTATGTATGGGAAGAGACGAAAAGCAACTGCTCATGCTGTTCTGTCCAAGGACCCAATTTCAATGGATTCAACTTCCTCCTTTGAAGGAAACTCCGTTTCTGAAAAGGTCCCAGCTAGTCCACTTCGGGTGCCACCTAGTCCATCAAGATTCTCAACGTCTCCAAAACTTAGTAGACTTCAATCATTACATCTCAACTTGAGCCAGGTTACAAGAGCTACCCGTAATTTCTCAGAAACATTGCAAATAGGCGAAGGAGGTTTTGGAACCGTTTACAAAGCCAAGTTAGAAGATGGCCTAGTTGTGGCTGTGAAACGCGCAAAAAGAGAACATTTTGAGAGTTTGAGAACAGAATTCAGCAGTGAAATTGAACTTCTGGCCAAAATTGATCATCGAAACCTGGTGAAGCTACTAGGTTATATTGACAAAGGAAATGAACGCCTACTTATTACAGAGTATGTGCCAAATGGTACTCTTCGAGAACATTTGGATGGTCTGCGTGGAAAAATCCTGGACTTCAATCAGCGCCTCGAAATTGCAATTGATGTTGCTCATGGCTTGACCTATCTGCATCTGTATGCAGAAAAGCAAATTATCCATCGAGATGTGAAGTCATCCAACATTCTTCTGACAGAAAGCATGAGAGCCAAAGTTGCTGATTTTGGATTTGCAAGGCAGGGTCCAGTGAACACTGATCAAACACACATTTCTACAAAAGTGAAGGGAACAGTTGGTTATTTGGACCCTGAGTATATGAAAACATACCAACTCACTCCCAAAAGTGATGTTTACTCATTTGGAATTTTGCTCTTAGAAATTGTGACAGGTCGCCGTCCTGTGGAGTTGAAGAAAACTGTTGAAGAGCGAGTTACACTAAGATGGGCCTTCAGGAAGTATAATGAAGGAAGTGTGGTGGAACTGGTGGATCCTTCAATGGAAGAAGCTGTAAATGCAGATGTGCTCATGAAGATGTTTGATTTGGCATTTCAGTGTGCAGCACCCATTCGATCAGATAGACCTGACATGAAATCAGTGGGTGAGCAATTGTGGGCAATAAGGGCTGATTACCTCAAGAGTGCAAAGAGAGAATAA 1509 0.4208 MAAITALFLVLLLQLSTVFGSAVFFQSKGCGTNWVAYSYSSRGQDLFYINGNVVNKVAFCKALQLYIANGCDVKDYFGSNNCALDVSSVNLPSKAGRKLLQKDLSNKSTSQGVSQPLSSDKVGIFAGGALLVCCVVLCPCMYGKRRKATAHAVLSKDPISMDSTSSFEGNSVSEKVPASPLRVPPSPSRFSTSPKLSRLQSLHLNLSQVTRATRNFSETLQIGEGGFGTVYKAKLEDGLVVAVKRAKREHFESLRTEFSSEIELLAKIDHRNLVKLLGYIDKGNERLLITEYVPNGTLREHLDGLRGKILDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTESMRAKVADFGFARQGPVNTDQTHISTKVKGTVGYLDPEYMKTYQLTPKSDVYSFGILLLEIVTGRRPVELKKTVEERVTLRWAFRKYNEGSVVELVDPSMEEAVNADVLMKMFDLAFQCAAPIRSDRPDMKSVGEQLWAIRADYLKSAKRE 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi704g00052 502 SMART serkin_6 216 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi704g00052 502 Gene3D Transferase(Phosphotransferase) domain 1 293 501 - -
Gabi704g00052 502 Pfam Protein tyrosine and serine/threonine kinase 221 488 IPR001245 GO:0004672|GO:0006468
Gabi704g00052 502 CDD STKc_IRAK 222 488 - -
Gabi704g00052 502 ProSitePatterns Protein kinases ATP-binding region signature. 222 244 IPR017441 GO:0005524
Gabi704g00052 502 MobiDBLite consensus disorder prediction 162 194 - -
Gabi704g00052 502 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 293 502 - -
Gabi704g00052 502 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 188 292 - -
Gabi704g00052 502 SUPERFAMILY Protein kinase-like (PK-like) 198 491 IPR011009 -
Gabi704g00052 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 337 349 IPR008271 GO:0004672|GO:0006468
Gabi704g00052 502 ProSiteProfiles Protein kinase domain profile. 216 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi704g00052 502 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 85 491 - -
Gabi704g00052 502 Gene3D Phosphorylase Kinase; domain 1 187 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi704g00052 Gabi-Chr704 499665 503691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi704g00052 121 492 Receptor kinase-like Gene Family AT3G46290 40.526 9.79e-77 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Gabi704g00052 PK_Tyr_Ser-Thr 4.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi704g00052 - - gmx:100798260 838.95