Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi704g00019 ATGGAGCTTCAACTAGGTCTCGCTCTCCCAACCAATCCCTCCTTCCATAAGAAACGTAGTTTTTCCCAACTCTTTGACGACCATGCACAAGTCACTACGAACAGTACTGACGTTATGCTTCCTACTCTGTCACTCCTTCCTGGCCACCCAAACCACGATGATGATCCTCATGAAGAACGCAGCCATTGCTCTACTATCACCACCAAGAACGATGAGGATGATGTAGAAGCTCTAGTGGGTTGGCCACCCGTAAGTTCTTGGAGGAAGAAACTTCGTTTCAATAACTATGATGGGGACGAGGTTGCAGGGAATGATCACGTGGTCTTGAATATTGATCATAATCATGGTGGACATGGTTCAGTTGGCCTGAGAGGATCGAAATCACTGTACGTGAAGGTGAAGATGGAAGGTGTAGGAATCGCTCGAAAGGTTGACCTCATCATGCATCATTCGTTTCAGACGCTCAAGGAAACCTTGATGGACATGTTTGGAAAATGTGGTCATCAACAGTCAAACAGCTATGAACTGGCTTATCAGGACGAAGAAGGTGATTGGCTTCTTGCTGAAGATGTGCCATGGAGAAGTTTCATTAAGTGTGCACAACGGCTCAAATTGCTGAAGAGCAGAGGATAA 633 0.4597 MELQLGLALPTNPSFHKKRSFSQLFDDHAQVTTNSTDVMLPTLSLLPGHPNHDDDPHEERSHCSTITTKNDEDDVEALVGWPPVSSWRKKLRFNNYDGDEVAGNDHVVLNIDHNHGGHGSVGLRGSKSLYVKVKMEGVGIARKVDLIMHHSFQTLKETLMDMFGKCGHQQSNSYELAYQDEEGDWLLAEDVPWRSFIKCAQRLKLLKSRG 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi704g00019 210 ProSiteProfiles PB1 domain profile. 128 210 IPR000270 GO:0005515
Gabi704g00019 210 Pfam AUX/IAA family 17 168 IPR033389 -
Gabi704g00019 210 Pfam AUX/IAA family 170 208 IPR033389 -
Gabi704g00019 210 Gene3D - 124 210 - -
Gabi704g00019 210 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 208 IPR003311 GO:0005634|GO:0006355
Gabi704g00019 210 SUPERFAMILY CAD & PB1 domains 120 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi704g00019 Gabi-Chr704 156032 157768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi704g00019 130 208 B3 DNA Binding Superfamily AT5G20730 35.366 4.23e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi704g00019 AUX_IAA 7.8e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi704g00019 K14484 - gmx:100804096 233.802