Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi698g00013 ATGGCCCTTCTTGGATTTCTTCTTCTGGGGTTTTTCTCTATGGTTTCACATGTAAATGGTTATGTTTATGGGGGTTGGACTAATGCTCATGCCACTTTCTATGGTGGAAGTGGGGCTTGTGGGTATGGAAACTTGTATAGCCAAGGTTATGGAACTAATACAGCAGCACTAAGCACTGCCATGTTCAACAATGGCTTGAGCTGTGGTGCATGTTTTGAAATCAAATGTGTGAATGACCCACAATGGTGTCTTCCTGGCTCAATTGTAGTCACTGCCACTAATTTTTGCCCACCTGGTGGTTGGTGTGACCCTCCCCAACACCATTTTGATCTTTCTCAACCAATTTTCCAGCACATTTCCCAGTATAAAGCTGGGATTGTACCTGTTATTTACAGAAGGGTAAGGTGCAGGAGAAGTGGTGGAATCAGGTTCACTATTAATGGTCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATGGTGTGGCAATCAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGGAACTGGGGGCAAAACTGGCAGAGTAATTCCTACCTGAATGGACAAAGCCTTTCCTTTATAGTCACCACCAGTAATGGCCATAGGTTGGTCTCATATAATGTTGCCCCATCTAGTTGGTCCTTTGGGCAGACCTACACTGGAAGGCAGTTCAACCACTAA 708 0.4435 MALLGFLLLGFFSMVSHVNGYVYGGWTNAHATFYGGSGACGYGNLYSQGYGTNTAALSTAMFNNGLSCGACFEIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPQHHFDLSQPIFQHISQYKAGIVPVIYRRVRCRRSGGIRFTINGHSYFNLVLVTNVGGAGDVHGVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFIVTTSNGHRLVSYNVAPSSWSFGQTYTGRQFNH 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi698g00013 235 Pfam Lytic transglycolase 54 131 IPR009009 -
Gabi698g00013 235 SUPERFAMILY PHL pollen allergen 138 230 IPR036749 -
Gabi698g00013 235 PRINTS Expansin/Lol pI family signature 178 192 IPR007118 GO:0005576
Gabi698g00013 235 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Gabi698g00013 235 PRINTS Expansin/Lol pI family signature 124 140 IPR007118 GO:0005576
Gabi698g00013 235 PRINTS Expansin/Lol pI family signature 36 54 IPR007118 GO:0005576
Gabi698g00013 235 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Gabi698g00013 235 SMART dpbb_1 54 131 IPR007112 -
Gabi698g00013 235 SUPERFAMILY Barwin-like endoglucanases 11 159 IPR036908 -
Gabi698g00013 235 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 37 141 IPR007112 -
Gabi698g00013 235 PRINTS Expansin signature 99 116 IPR002963 GO:0009664
Gabi698g00013 235 PRINTS Expansin signature 216 232 IPR002963 GO:0009664
Gabi698g00013 235 PRINTS Expansin signature 76 87 IPR002963 GO:0009664
Gabi698g00013 235 PRINTS Expansin signature 152 173 IPR002963 GO:0009664
Gabi698g00013 235 PRINTS Expansin signature 187 208 IPR002963 GO:0009664
Gabi698g00013 235 PRINTS Expansin signature 49 63 IPR002963 GO:0009664
Gabi698g00013 235 PRINTS Expansin signature 116 129 IPR002963 GO:0009664
Gabi698g00013 235 PRINTS Expansin signature 140 152 IPR002963 GO:0009664
Gabi698g00013 235 PRINTS Expansin signature 88 98 IPR002963 GO:0009664
Gabi698g00013 235 Gene3D - 14 137 IPR036908 -
Gabi698g00013 235 Gene3D - 141 233 IPR036749 -
Gabi698g00013 235 FunFam Expansin 141 233 - -
Gabi698g00013 235 CDD DPBB_EXPA_N 25 136 - -
Gabi698g00013 235 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 151 230 IPR007117 -
Gabi698g00013 235 PANTHER EXPANSIN-A15 11 233 IPR002963 GO:0009664
Gabi698g00013 235 Pfam Expansin C-terminal domain 142 219 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi698g00013 Gabi-Chr698 74586 75591 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi698g00013 1 233 Expansin Gene Family AT2G03090 75.000 7.55e-133 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi698g00013 K20628 - gmx:100791784 432.95