Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi698g00004 ATGGAATCAATGGAGAACGTTTTCGGAGCAAGAATGGAAGATCAGCAGCTTGACTTGCCACCTGGTTTTCAATTTCATCCAACAGATGAAGACCTCATAAATTGCTACCTCATGAAGAAGGTTGCTGACAGCAGCTTCTCTGATCTAGCAATTGCTGAAGTTGATATGAACAAGTGTGAACCATGGGATTTGCCTGGGTTGTCTAAAATGGGTGAGACAGAATGGTACTTTTTCTGTGTGAGAGAGAGAGAAAGAAAATACCCAAATGGTCTAAGGACAAATTGGGCCACTGAAGGTGGTTACTGGAAGGAGGTCACAGGCGACTACAATGGGGTACTCAATGAAGCAGATTTGATTGGGATGAGGAAAACCTTGGTTTACTATAAGGGAAGAGCACCAAGAGGAGAAAAGACAAACTGGCTCATGCATGAATACAGATTGGATGGGATATATTCTCAATTTTATCCATCCAAATCTAGAAAGGGTGAATGGGTTATATGCAGAGTCTTTGAAAAGATTATTTGTGAAATGAATATGGATGATCCAGAGTTTGAGTTTGAGTTTGAGCAGTTCCAATTACCTTCATTGATGGATTCTTCTCCATACAACACTGCCGGTGAATTGTCTCATGCAAAAATATTTATCATAGCCAAGTCCATAACACTTTATCCATATGTTGTCAATGGTCTTGTTAGTTAA 699 0.3991 MESMENVFGARMEDQQLDLPPGFQFHPTDEDLINCYLMKKVADSSFSDLAIAEVDMNKCEPWDLPGLSKMGETEWYFFCVRERERKYPNGLRTNWATEGGYWKEVTGDYNGVLNEADLIGMRKTLVYYKGRAPRGEKTNWLMHEYRLDGIYSQFYPSKSRKGEWVICRVFEKIICEMNMDDPEFEFEFEQFQLPSLMDSSPYNTAGELSHAKIFIIAKSITLYPYVVNGLVS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi698g00004 232 ProSiteProfiles NAC domain profile. 19 172 IPR003441 GO:0003677|GO:0006355
Gabi698g00004 232 SUPERFAMILY NAC domain 15 171 IPR036093 GO:0003677|GO:0006355
Gabi698g00004 232 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 187 - -
Gabi698g00004 232 FunFam NAC domain-containing protein 100-like 28 176 - -
Gabi698g00004 232 Pfam No apical meristem (NAM) protein 20 147 IPR003441 GO:0003677|GO:0006355
Gabi698g00004 232 Gene3D NAC domain 28 174 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi698g00004 Gabi-Chr698 27078 35056 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi698g00004 13 214 NAC Transcription Factor Family AT5G39610 55.556 1.57e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi698g00004 NAM 8.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi698g00004 - - gmx:100782172 251.136