Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi696g00009 ATGGAATTTACCTGCCCCAAAGATGGTGATCCTGGTTTTGGATACTTAGTGTTAAGTACAGATTTGGTTTATATGAATGATCTGGGGTGCAAGAATAACATCACAGTTCCTGTGGCTATCCAGAGTTCCATTAAAGATGTACAAAGTGTTTTAGATGAAGGTTTTGAAGTTGGGTGGAATGTAGTGGATGGAGACAAATGTGATAGTTGCATACAATCTGGTGGGAGATGTGGATACAATGCATCTATAAATGCATTTATGTGCTTCTGTCTTAATCAGCAATCTTATGGTGGGATTTGTGGGAAAAACTCAGCAAGGTCACCATTAGCAGCACCAAACCGGGCACTGTTACCACCACATCCACCAAAAATTCTAGAGAAGTCTAATCCTGCTACGAAGAAATTGAATTCGAAGACGATAATCATTATAGGTGTTTGTTCTGCTGTGTTCGTAACACTTGTAGCGTCCATTGCATTTTATTTCTATCGGCGCCAAAAGAAGAATAGTTATGCAAAGTCATATGTACAATCTCAGAGCTTCTCTTCTGAACCATCTTTAAAAGATCCTGAGAGGGGAAGTCAATACTTTGGAGCACACCTCTTTGCATACAGTGAACTTGAAGAGGCCACAAACCACTTTGATTCATCCAGAGAACTAGGAGAAGGGGGTTTTGGGACAGTGTATTTTGGCAAACTGCGAGATGGACGTTGTGTTGCAGTGAAGAGGTTGTATGAGAACAATTGCAGGAGAGTGGAGCAATTCATAAATGAAGTTCAAATCCTAACTAGGTTAGTCCACCCAAATCTTGTATCACTATATGGATGCACTTCTCGACACAGCCGTGAACTTCTGCTTGTATATGAGTACATTCCTAATGGAACTGTTGCTGATAATCTTCATGGTGAACAAGCCAAACCTGGAACACTCTCTTGGCATACTAGAATGGATATTGCCGTAGAGACTGCTAGTGCATTGAACTATCTACATGTTTCTGGCATCATCCACAGAGATGTGAAAACCAATAATATTCTTCTTGACAATCACTTTCGTGTGAAAGTAGCAGATTTTGGACTTTCACGTCTTTTTCCAAACGATCTCAGTCATGTTTCAACAGCTCCACAAGGGACTCCAGGTTATGTGGATCCAGAGTATCATGAGTGCTACCAGCTTACTAACAAAAGTGATGTTTATAGCTTTGGAGTAGTGTTGATTGAGTTGATATCATCCTTGCCTGCTGTTGATATCACAAGGCATAGGCATGAAATCAATTTATCCAACATGGCCATTAACAAGATTCATAACCAGGCATTGCATGAGCTTGTGGATCCAACTCTTGGGTTTGAATCAGATTACAAGGTAAGGAAAATGATAAATGCTGTAGCTGAATTAGCATTTCAATGCTTGCAAAGTTCCAAAGATGTGAGGCCTTCTATGGAAGAAGTGTTTAATACTCTCAAGTATATACAAAGTGATGGAAAATATAAAAGCCAACCCGAGGTAATGGATATCTCAAGCTCAACAGAAAATGTTGTGTTGCTGAAGGATGACCCACCTCCACCATCACCAGATTCAAATGCTGTGAGCAAGTCTACAACACCAAATGCTAGTGGATAA 1614 0.4021 MEFTCPKDGDPGFGYLVLSTDLVYMNDLGCKNNITVPVAIQSSIKDVQSVLDEGFEVGWNVVDGDKCDSCIQSGGRCGYNASINAFMCFCLNQQSYGGICGKNSARSPLAAPNRALLPPHPPKILEKSNPATKKLNSKTIIIIGVCSAVFVTLVASIAFYFYRRQKKNSYAKSYVQSQSFSSEPSLKDPERGSQYFGAHLFAYSELEEATNHFDSSRELGEGGFGTVYFGKLRDGRCVAVKRLYENNCRRVEQFINEVQILTRLVHPNLVSLYGCTSRHSRELLLVYEYIPNGTVADNLHGEQAKPGTLSWHTRMDIAVETASALNYLHVSGIIHRDVKTNNILLDNHFRVKVADFGLSRLFPNDLSHVSTAPQGTPGYVDPEYHECYQLTNKSDVYSFGVVLIELISSLPAVDITRHRHEINLSNMAINKIHNQALHELVDPTLGFESDYKVRKMINAVAELAFQCLQSSKDVRPSMEEVFNTLKYIQSDGKYKSQPEVMDISSSTENVVLLKDDPPPPSPDSNAVSKSTTPNASG 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi696g00009 537 SMART serkin_6 213 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00009 537 Gene3D Transferase(Phosphotransferase) domain 1 290 500 - -
Gabi696g00009 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 333 345 IPR008271 GO:0004672|GO:0006468
Gabi696g00009 537 Gene3D Phosphorylase Kinase; domain 1 185 289 - -
Gabi696g00009 537 Pfam Wall-associated receptor kinase C-terminal 29 92 IPR032872 -
Gabi696g00009 537 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 26 534 IPR044652 GO:0004672
Gabi696g00009 537 Pfam Protein kinase domain 214 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00009 537 MobiDBLite consensus disorder prediction 506 537 - -
Gabi696g00009 537 ProSiteProfiles Protein kinase domain profile. 213 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00009 537 SUPERFAMILY Protein kinase-like (PK-like) 194 491 IPR011009 -
Gabi696g00009 537 FunFam Wall-associated receptor kinase-like 20 290 498 - -
Gabi696g00009 537 ProSitePatterns Protein kinases ATP-binding region signature. 219 241 IPR017441 GO:0005524
Gabi696g00009 537 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 185 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi696g00009 Gabi-Chr696 149795 161677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi696g00009 143 537 Receptor kinase-like Gene Family AT1G25390 57.635 2.68e-147 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi696g00009 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi696g00009 - - gmx:100800873 722.62