Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi696g00006 ATGTTCCGTAAGTCCAAATTCACCATCTCTTTCATCTTCTTATTAACCACCTTGCTACAATCTCACTCGAAAGTTGAAGACACGAAATACTCAGTTTGTAGCAGGCCATACAACTGTGGAGAAGTGTCCAACATATCCTACCCTTTCTGGGGACAGAACAGACCCCATTACTGTGGCAGCACCGAGCAGTTAAAGCTAAACTGTGAGGCAAACCAAGACACTTCATTTCAATTTGACACACAAAATTTCAGAGTATTGAGGATTGACACTTTATCTAAAACCATGAGACTTGTTCGAACAGACCTTGTCTATGATGATTGTTCCTCTGACTTGACCAACACCTCGTTGAGTTCCAAAATCTTTGAATTTCCCGAAGATGTACACAACATCACCATATTCTACGGTTGTCCCACTGGGTTTTCGTTAGGTGGTAACAACTTTACGTGCAAAGATGACACAAAGTATAGGATTGCTGGCGCACAATTTGGTTTCTATGTGAAAATGACAGAGAGTCTGTTGCAGCAATATCCAGAGCTTGAGACATGCGCGACACGTATACATGTGCTGGTTTACAGGGAAATTCCTCTGGATTCTGACGGTGGTATAGATTCTCTGAGAAAAGCTGCTGCTAATGGTTTTGACGTGTTCTATAATATTGCAGATGATGGAGAATGCACAAGTTGCATGGAAAGTAAAGGAGCTTGTGGAACGAATGATACTGCTAAGGATCAATTTTCTTGTCATTGCCCTGATGGGTCTGATGCTTTGCAATGCTATGGTCACAATACTAATCCCAGCACATTATCACCATCACCATTGCCAACACCGGCACCGGCACTGTTACCGCCTAGTCCTTCGTCAAACTTCCCAGACCCATCTCCACATGCTACTAGTCATAAATGGAATAGAAAGAGGAAACTCATTATTATAGGTGTTACAGGTGCAGCAATTGGAGGATTGTTGATATGTATTGCAATTTTCTATTTGAGATATAAATCATCAACATGGCTAGGAGATTTTGGGTTGACTGCAAAGAGTAACCAACATATTGAAGCATTCTTAAAAAATCATGGAGGTCAAACTCTAAAAAGATACAAATTATCAGATATCAAGAAAATGACCAATGGCTTCGAAGTTAAACTAGGACAAGGTGGTTTTGGTGCTGTCTATAAAGGAAAACTGCTCAATGGTTGCCCTGTAGCTGTAAAGATATTGAATGCATCCAAAAGAAATGGTGAAGAATTTATCAATGAGGTTGCTAGCATCAGTAAAACTTCTCATGTTAACGTTGTCACACTTCTTGGGTTCTGTTTGGAAGGCCCAAAGAAAGCTCTAATCTATGAATTTATGTCCAATGGTTCCCTTGATAAGTTCATTTACAGAAAAGGACCTGAAACTGCTCCACCCTTGAGTTGGGATATTTTGTATCAAATAGCAATGGGCATAGCTCGAGGGTTAGAGTACTTACATAAGGGATGCAACACTAGAATTTTACATTTTGACATAAAACCACATAATATTCTTTTGGATGAGAATTTTTGTCCCAAGATATCAGATTTTGGGCTAGCAAAACTGTGTCCCAGGAAAGAGAGCATTATTTCCATGTCAGATGCTAGAGGAACAATGGGGTATGTTGCTCCAGAAGTGCTGAATAGACATTTTGCTGGAGTTTCACACAAGTCTGATGTTTATAGCTATGGAATGATGCTGCTCGAAATGGTGGGAGGTAGGAAGAACATTAATGCAGAAGCCAGTCACACAAGTGAGATATACTTCCCACATTGGGTATACAAGAGACTAGAGTTTGGCATTGAGTTGAAACTAGATGAGGTGATGACAACAGAAGAAAATGAGATAGCAAAGAGATTGACCGTAGTGGGTTTATGGTGCATTCAAACGTTTCCAAATGATAGACCTACAATTAGTAGAGTGATAGATATGTTGGATGGCAGCATGAATTCTTTGGAAATGCCACCGAAACCTTTGCTTTCTTCTCCTACTAGATCAGTAGTGGAATCTTCCACTTCTTGA 2031 0.4008 MFRKSKFTISFIFLLTTLLQSHSKVEDTKYSVCSRPYNCGEVSNISYPFWGQNRPHYCGSTEQLKLNCEANQDTSFQFDTQNFRVLRIDTLSKTMRLVRTDLVYDDCSSDLTNTSLSSKIFEFPEDVHNITIFYGCPTGFSLGGNNFTCKDDTKYRIAGAQFGFYVKMTESLLQQYPELETCATRIHVLVYREIPLDSDGGIDSLRKAAANGFDVFYNIADDGECTSCMESKGACGTNDTAKDQFSCHCPDGSDALQCYGHNTNPSTLSPSPLPTPAPALLPPSPSSNFPDPSPHATSHKWNRKRKLIIIGVTGAAIGGLLICIAIFYLRYKSSTWLGDFGLTAKSNQHIEAFLKNHGGQTLKRYKLSDIKKMTNGFEVKLGQGGFGAVYKGKLLNGCPVAVKILNASKRNGEEFINEVASISKTSHVNVVTLLGFCLEGPKKALIYEFMSNGSLDKFIYRKGPETAPPLSWDILYQIAMGIARGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRKESIISMSDARGTMGYVAPEVLNRHFAGVSHKSDVYSYGMMLLEMVGGRKNINAEASHTSEIYFPHWVYKRLEFGIELKLDEVMTTEENEIAKRLTVVGLWCIQTFPNDRPTISRVIDMLDGSMNSLEMPPKPLLSSPTRSVVESSTS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi696g00006 676 MobiDBLite consensus disorder prediction 656 676 - -
Gabi696g00006 676 FunFam PR5-like receptor kinase 450 660 - -
Gabi696g00006 676 SMART serkin_6 375 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00006 676 Gene3D Phosphorylase Kinase; domain 1 341 449 - -
Gabi696g00006 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Gabi696g00006 676 Pfam Wall-associated receptor kinase galacturonan-binding 33 99 IPR025287 GO:0030247
Gabi696g00006 676 Pfam Wall-associated receptor kinase C-terminal 149 252 IPR032872 -
Gabi696g00006 676 Pfam Protein kinase domain 379 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00006 676 MobiDBLite consensus disorder prediction 269 290 - -
Gabi696g00006 676 PANTHER RUST RESISTANCE KINASE LR10-RELATED 346 668 IPR045874 GO:0004672
Gabi696g00006 676 Gene3D Transferase(Phosphotransferase) domain 1 450 662 - -
Gabi696g00006 676 ProSiteProfiles Protein kinase domain profile. 375 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00006 676 MobiDBLite consensus disorder prediction 267 298 - -
Gabi696g00006 676 SUPERFAMILY Protein kinase-like (PK-like) 360 648 IPR011009 -
Gabi696g00006 676 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi696g00006 Gabi-Chr696 57491 70724 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi696g00006 10 675 Receptor kinase-like Gene Family AT1G66910 37.901 2.44e-140 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi696g00006 Pkinase 3.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi696g00006 - - gmx:100792936 712.99