Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi696g00005 ATGGACGATAACATTCATATACGCTTAGTCCTTACAACCATAGCCACCATGTTTTTCTTCATCTTAACCAATTTGCCACAGTCCCAATCCCAAGGAGGAGAAAACAAATACACAAATTGTAGCAAGCCATACAACTGTGGAAATGTGTCCAACATCTTCTACCCTTTCTGGGGACACCACAGACCCCAATATTGTGGCGGTGGCGACCAATTAGATTTCAAACTTCAGTGTCAGAATGATCATACCATCATTCTAAACGGCTTACAAAATTTCCAAGTTTTGCATATCGACACAACAGCTTACACCGTTAGAATGAAACAAACGGTCGATGATGTTTGTTCTCCGACATTTAACGACATTTACTTGGACCTGGACGCAACCGTCTTCACGTATCCAGCAACTGTGTACAACATCACCATTTTCTACAACTGTCCCTCTTCGGTTTTCACTCATGAAAACAACTTCACGTGTGGAAATGAGAATGGTACCTATCATGTGGGTGAGAAAGATGACGTGTTGAAAGAACATCCAGAGTTTCAGAATTGCACGCGACATATCCAAGTGCCGATTCAGGTTCCTCTGAATCTTGATGGCGATAGATTTGATGCTCTGGAAGGTGCTTTGGATGGTGGGTTTGAGGTGAACTATACTAAAGCACACGCTCAAGAATGCATACGATGTTTGGATAGTGAAGGAGCTTGTGGAGTTAATTTAACTTCTCATCGATTTACCTGTTATTGCCAAGATGGATCCGATGCTATTCATTGCTATGGTCGAGGTTCTAATAGTACTCGGTGGAACTTGACATGGAAATTACTTATAGGTATTATTGGTGGAGTGATAACAGTATTGTTGATATGTATCGCTACTTTTTGTTTTAGATGCAAGTCCTCATCTTGGCATGGAAAATTTTGGTTGACCACAAAAGGTAACAAAGATATTGAAGCATTCTTAAAAAATCATGGAGCCTTAACTCTAAAAAGATACAAATTCTCAGATGTCAAGAAAATGACCAACTCCTTCAAAAATAAACTCGGGCAAGGTGGTTTTGGTGCTGTATACAAAGGACAACTATTTAATGGTTGCCCTGTGGCCGTAAAGATATTGAGGTCATCGAAAGGAAACAATGAAGACTTCATCAACGAGGTTGCCAGTATCAGTAGCACTTCTCATGTCAATGTTGTCACCCTTCTTGGATTTTGTTTTGAAGGCCGCAAGAAAGCTCTCATCTATGAATTTATGTCCAATGGTTCCCTTGAAAAGTTTATTTACAGAAATGGACATGAAGCCGTTGCTTCTTTGAACTGGGAGGATTTGTATCAAATTGCCATGGGGATTGCTCGAGGGCTGGAGTACTTGCATAGGGGATGCAATACTAGAATTTTGCATTTTGACATAAAACCACATAATATCCTTTTGGATGAGAATTTCTGCCCCAAGATATCAGATTTTGGGCTAGCAAAGCTCTGTCCTAGGAAAGAGAGCATGATTTCAATGTCAGATGCTAGAGGGACAATTGGGTATGTAGCTCCAGAAATGTGGAATAGACATTTTGGAGGAGTATCTCATAAGTCAGATGTTTATAGCTACGGAATGATGCTGCTAGAAATGGTGGGAGGGAGAAGGAACGTTAATGCTGACGCCAGTCATACTAGTGAGTTATACTTCCCACATTGGGTATACAACAGGCTTAAGCAAGGCACGGATTTGAGACCATATGAGGTGATTAAAACAGAAGAAAATGAGATAGCAAAAAGATTGACCATAGTGGGTTTGTGGTGCACTCAAACGTTTCCAAATGATAGACCTACAATTAGTAGAGTGATAGATATGTTGGAAGGCAGCATGAATTCCCTGGAAATTCCACCAAAACCTTTTCTTTCTTCTCCTACTAGATCAGTATCTGAATCCTCCACTTTTTGA 1923 0.4035 MDDNIHIRLVLTTIATMFFFILTNLPQSQSQGGENKYTNCSKPYNCGNVSNIFYPFWGHHRPQYCGGGDQLDFKLQCQNDHTIILNGLQNFQVLHIDTTAYTVRMKQTVDDVCSPTFNDIYLDLDATVFTYPATVYNITIFYNCPSSVFTHENNFTCGNENGTYHVGEKDDVLKEHPEFQNCTRHIQVPIQVPLNLDGDRFDALEGALDGGFEVNYTKAHAQECIRCLDSEGACGVNLTSHRFTCYCQDGSDAIHCYGRGSNSTRWNLTWKLLIGIIGGVITVLLICIATFCFRCKSSSWHGKFWLTTKGNKDIEAFLKNHGALTLKRYKFSDVKKMTNSFKNKLGQGGFGAVYKGQLFNGCPVAVKILRSSKGNNEDFINEVASISSTSHVNVVTLLGFCFEGRKKALIYEFMSNGSLEKFIYRNGHEAVASLNWEDLYQIAMGIARGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRKESMISMSDARGTIGYVAPEMWNRHFGGVSHKSDVYSYGMMLLEMVGGRRNVNADASHTSELYFPHWVYNRLKQGTDLRPYEVIKTEENEIAKRLTIVGLWCTQTFPNDRPTISRVIDMLEGSMNSLEIPPKPFLSSPTRSVSESSTF 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi696g00005 640 FunFam serine/threonine-protein kinase PBS1-like 308 413 - -
Gabi696g00005 640 FunFam PR5-like receptor kinase 414 624 - -
Gabi696g00005 640 SMART serkin_6 339 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00005 640 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Gabi696g00005 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Gabi696g00005 640 Gene3D Phosphorylase Kinase; domain 1 306 413 - -
Gabi696g00005 640 Pfam Wall-associated receptor kinase galacturonan-binding 40 106 IPR025287 GO:0030247
Gabi696g00005 640 SUPERFAMILY Protein kinase-like (PK-like) 325 613 IPR011009 -
Gabi696g00005 640 Gene3D Transferase(Phosphotransferase) domain 1 414 625 - -
Gabi696g00005 640 Pfam Wall-associated receptor kinase C-terminal 174 250 IPR032872 -
Gabi696g00005 640 ProSiteProfiles Protein kinase domain profile. 339 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00005 640 Pfam Protein tyrosine and serine/threonine kinase 341 611 IPR001245 GO:0004672|GO:0006468
Gabi696g00005 640 PANTHER RUST RESISTANCE KINASE LR10-RELATED 311 631 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi696g00005 Gabi-Chr696 41330 52200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi696g00005 5 640 Receptor kinase-like Gene Family AT1G66910 39.344 2.06e-149 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi696g00005 PK_Tyr_Ser-Thr 7.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi696g00005 - - gmx:100792936 723.005