Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi696g00004 ATGGACGATAACATTCATATACGCTTAGTCCTTACAACCATAGCCACCATGTTTTTCTTCATCTTAACCAATTTGCCACAGTCCCAATCCCAAGGAGGAGAAAACAAATACACAAATTGTAGCAAGCCATACAACTGTGGAAATGTGTCCAACATCTTCTACCCTTTCTGGGGACACCACAGACCCCAATATTGTGGCGGTGGCGACCAATTAGATTTCAAACTTCAGTGTCAGAATGATCATACCATCATTCTAAACGGCTTACAAAATTTCCAAGTTTTGCATATCGACACAACAGCTTACACCGTTAGAATGAAACAAACGGTCGATGATGTTTGTTCTCCGACATTTAACGACATTTACTTGGACCTGGACGCAACCGTCTTCACGTATCCAGCAACTGTGTACAACATCACCATTTTCTACAACTGTCCCTCTTCGGTTTTCACTCATGAAAACAACTTCACGTGTGGAAATGAGAATGGTACCTATCATGTGGGTGAGAAAGATGACGTGTTGAAAGAACATCCAGAGTTTCAGAATTGCACGCGACATATCCAAGTGCCGATTCAGGTTCCTCTGAATCTTGATGGCGATAGATTTGATGCTCTGGAAGGTGCTTTGGATGGTGGGTTTGAGGTGAACTATACTAAAGCACACGCTCAAGAATGCATACGATGTTTGGATAGTGAAGGAGCTTGTGGAGTTAATTTAACTTCTCATCGATTTACCTGTTATTGCCAAGATGGATCCGATGCTATTCATTGCTATGGTCGAGGTTCTAATAGTACTCGGTGGAACTTGACATGGAAATTACTTATAGTTTCCAAGCTTCAAGGAATCAAGACTCCTCCCAATCACCAATCTTCAAGAATGGCGCCATACTTTGGGAAGGATTTTCTGTCAACACAAAGCTTCTCCAAGGAAAATGGTATTATTGGTGGAGTGATAACAGTATTGTTGATATGTATCGCTACTTTTTGTTTTAGATGCAAGTCCTCATCTTGGCATGGAAAATTTTGGTTGACCACAAAAGATGTCAAGAAAATGACCAACTCCTTCAAAAATAAACTCGGGCAAGGTGGTTTTGGTGCTGTATACAAAGGACAACTATTTAATGGTTGCCCTGTGGCCGTAAAGATATTGAGGTCATCGAAAGGAAACAATGAAGACTTCATCAACGAGGTTGCCAGTATCAGTAGCACTTCTCATGTCAATGTTGTCACCCTTCTTGGATTTTGTTTTGAAGGCCGCAAGAAAGCTCTCATCTATGAATTTATGTCCAATGGTTCCCTTGAAAAGTTTATTTACAGAAATGGACATGAAGCCGTTGCTTCTTTGAACTGGGAGGATTTGTATCAAATTGCCATGGGGATTGCTCGAGGGCTGGAGTACTTGCATAGGGGATGCAATACTAGAATTTTGCATTTTGACATAAAACCACATAATATCCTTTTGGATGAGAATTTCTGCCCCAAGATATCAGATTTTGGGCTAGCAAAGCTCTGTCCTAGGAAAGAGAGCATGATTTCAATGTCAGATGCTAGAGGGACAATTGGGTATGTAGCTCCAGAAATGTGGAATAGACATTTTGGAGGAGTATCTCATAAGTCAGATGTTTATAGCTACGGAATGATGCTGCTAGAAATGGTGGGAGGGAGAAGGAACGTTAATGCTGACGCCAGTCATACTAGTGAGTTATACTTCCCACATTGGGTATACAACAGGCTTAAGCAAGGCACGGATTTGAGACCATATGAGGTGATTAAAACAGAAGAAAATGAGATAGCAAAAAGATTGACCATAGTGGGTTTGTGGTGCACTCAAACGTTTCCAAATGATAGACCTACAATTAGTAGAGTGATAGATATGTTGGAAGGCAGCATGAATTCCCTGGAAATTCCACCAAAACCTTTTCTTTCTTCTCCTACTAGATCAGTATCTGAATCCTCCACTTTTTGA 1962 0.4088 MDDNIHIRLVLTTIATMFFFILTNLPQSQSQGGENKYTNCSKPYNCGNVSNIFYPFWGHHRPQYCGGGDQLDFKLQCQNDHTIILNGLQNFQVLHIDTTAYTVRMKQTVDDVCSPTFNDIYLDLDATVFTYPATVYNITIFYNCPSSVFTHENNFTCGNENGTYHVGEKDDVLKEHPEFQNCTRHIQVPIQVPLNLDGDRFDALEGALDGGFEVNYTKAHAQECIRCLDSEGACGVNLTSHRFTCYCQDGSDAIHCYGRGSNSTRWNLTWKLLIVSKLQGIKTPPNHQSSRMAPYFGKDFLSTQSFSKENGIIGGVITVLLICIATFCFRCKSSSWHGKFWLTTKDVKKMTNSFKNKLGQGGFGAVYKGQLFNGCPVAVKILRSSKGNNEDFINEVASISSTSHVNVVTLLGFCFEGRKKALIYEFMSNGSLEKFIYRNGHEAVASLNWEDLYQIAMGIARGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRKESMISMSDARGTIGYVAPEMWNRHFGGVSHKSDVYSYGMMLLEMVGGRRNVNADASHTSELYFPHWVYNRLKQGTDLRPYEVIKTEENEIAKRLTIVGLWCTQTFPNDRPTISRVIDMLEGSMNSLEIPPKPFLSSPTRSVSESSTF 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi696g00004 653 FunFam PR5-like receptor kinase 427 637 - -
Gabi696g00004 653 SMART serkin_6 352 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00004 653 Pfam Wall-associated receptor kinase C-terminal 174 250 IPR032872 -
Gabi696g00004 653 Gene3D Transferase(Phosphotransferase) domain 1 427 638 - -
Gabi696g00004 653 Pfam Protein tyrosine and serine/threonine kinase 354 624 IPR001245 GO:0004672|GO:0006468
Gabi696g00004 653 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Gabi696g00004 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Gabi696g00004 653 ProSiteProfiles Protein kinase domain profile. 352 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00004 653 PANTHER RUST RESISTANCE KINASE LR10-RELATED 342 644 IPR045874 GO:0004672
Gabi696g00004 653 Pfam Wall-associated receptor kinase galacturonan-binding 40 106 IPR025287 GO:0030247
Gabi696g00004 653 SUPERFAMILY Protein kinase-like (PK-like) 336 626 IPR011009 -
Gabi696g00004 653 Gene3D Phosphorylase Kinase; domain 1 330 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi696g00004 Gabi-Chr696 41330 52200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi696g00004 5 653 Receptor kinase-like Gene Family AT1G66910 38.261 1.42e-141 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi696g00004 PK_Tyr_Ser-Thr 8.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi696g00004 - - gmx:100792936 664.84