Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi696g00003 ATGGACGATAACATTCATATACGCTTAGTCCTTACAACCATAGCCACCATGTTTTTCTTCATCTTAACCAATTTGCCACAGTCCCAATCCCAAGGAGGAGAAAACAAATACACAAATTGTAGCAAGCCATACAACTGTGGAAATGTGTCCAACATCTTCTACCCTTTCTGGGGACACCACAGACCCCAATATTGTGGCGGTGGCGACCAATTAGATTTCAAACTTCAGTGTCAGAATGATCATACCATCATTCTAAACGGCTTACAAAATTTCCAAGTTTTGCATATCGACACAACAGCTTACACCGTTAGAATGAAACAAACGGTCGATGATGTTTGTTCTCCGACATTTAACGACATTTACTTGGACCTGGACGCAACCGTCTTCACGTATCCAGCAACTGTGTACAACATCACCATTTTCTACAACTGTCCCTCTTCGGTTTTCACTCATGAAAACAACTTCACGTGTGGAAATGAGAATGGTACCTATCATGTGGGTGAGAAAGATGACGTGTTGAAAGAACATCCAGAGTTTCAGAATTGCACGCGACATATCCAAGTGCCGATTCAGGTTCCTCTGAATCTTGATGGCGATAGATTTGATGCTCTGGAAGGTGCTTTGGATGGTGGGTTTGAGGTGAACTATACTAAAGCACACGCTCAAGAATGCATACGATGTTTGGATAGTGAAGGAGCTTGTGGAGTTAATTTAACTTCTCATCGATTTACCTGTTATTGCCAAGATGGATCCGATGCTATTCATTGCTATGGTCGAGGTTCTAATAGTACTCGGTGGAACTTGACATGGAAATTACTTATAGTTTCCAAGCTTCAAGGAATCAAGACTCCTCCCAATCACCAATCTTCAAGAATGGCGCCATACTTTGGGAAGGATTTTCTGTCAACACAAAGCTTCTCCAAGGAAAATGGTATTATTGGTGGAGTGATAACAGTATTGTTGATATGTATCGCTACTTTTTGTTTTAGATGCAAGTCCTCATCTTGGCATGGAAAATTTTGGTTGACCACAAAAGGTAACAAAGATATTGAAGCATTCTTAAAAAATCATGGAGCCTTAACTCTAAAAAGATACAAATTCTCAGATGTCAAGAAAATGACCAACTCCTTCAAAAATAAACTCGGGCAAGGTGGTTTTGGTGCTGTATACAAAGGACAACTATTTAATGGTTGCCCTGTGGCCGTAAAGATATTGAGGTCATCGAAAGGAAACAATGAAGACTTCATCAACGAGGTTGCCAGTATCAGTAGCACTTCTCATGTCAATGTTGTCACCCTTCTTGGATTTTGTTTTGAAGGCCGCAAGAAAGCTCTCATCTATGAATTTATGTCCAATGGTTCCCTTGAAAAGTTTATTTACAGAAATGGACATGAAGCCGTTGCTTCTTTGAACTGGGAGGATTTGTATCAAATTGCCATGGGGATTGCTCGAGGGCTGGAGTACTTGCATAGGGGATGCAATACTAGAATTTTGCATTTTGACATAAAACCACATAATATCCTTTTGGATGAGAATTTCTGCCCCAAGATATCAGATTTTGGGCTAGCAAAGCTCTGTCCTAGGAAAGAGAGCATGATTTCAATGTCAGATGCTAGAGGGACAATTGGGTATGTAGCTCCAGAAATGTGGAATAGACATTTTGGAGGAGTATCTCATAAGTCAGATGTTTATAGCTACGGAATGATGCTGCTAGAAATGGTGGGAGGGAGAAGGAACGTTAATGCTGACGCCAGTCATACTAGTGAGTTATACTTCCCACATTGGGTATACAACAGGCTTAAGCAAGGCACGGATTTGAGACCATATGAGGTGATTAAAACAGAAGAAAATGAGATAGCAAAAAGATTGACCATAGTGGGTTTGTGGTGCACTCAAACGTTTCCAAATGATAGACCTACAATTAGTAGAGTGATAGATATGTTGGAAGGCAGCATGAATTCCCTGGAAATTCCACCAAAACCTTTTCTTTCTTCTCCTACTAGATCAGTATCTGAATCCTCCACTTTTTGA 2031 0.4047 MDDNIHIRLVLTTIATMFFFILTNLPQSQSQGGENKYTNCSKPYNCGNVSNIFYPFWGHHRPQYCGGGDQLDFKLQCQNDHTIILNGLQNFQVLHIDTTAYTVRMKQTVDDVCSPTFNDIYLDLDATVFTYPATVYNITIFYNCPSSVFTHENNFTCGNENGTYHVGEKDDVLKEHPEFQNCTRHIQVPIQVPLNLDGDRFDALEGALDGGFEVNYTKAHAQECIRCLDSEGACGVNLTSHRFTCYCQDGSDAIHCYGRGSNSTRWNLTWKLLIVSKLQGIKTPPNHQSSRMAPYFGKDFLSTQSFSKENGIIGGVITVLLICIATFCFRCKSSSWHGKFWLTTKGNKDIEAFLKNHGALTLKRYKFSDVKKMTNSFKNKLGQGGFGAVYKGQLFNGCPVAVKILRSSKGNNEDFINEVASISSTSHVNVVTLLGFCFEGRKKALIYEFMSNGSLEKFIYRNGHEAVASLNWEDLYQIAMGIARGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRKESMISMSDARGTIGYVAPEMWNRHFGGVSHKSDVYSYGMMLLEMVGGRRNVNADASHTSELYFPHWVYNRLKQGTDLRPYEVIKTEENEIAKRLTIVGLWCTQTFPNDRPTISRVIDMLEGSMNSLEIPPKPFLSSPTRSVSESSTF 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi696g00003 676 Pfam Protein tyrosine and serine/threonine kinase 377 647 IPR001245 GO:0004672|GO:0006468
Gabi696g00003 676 ProSiteProfiles Protein kinase domain profile. 375 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00003 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Gabi696g00003 676 FunFam PR5-like receptor kinase 450 660 - -
Gabi696g00003 676 SMART serkin_6 375 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00003 676 FunFam serine/threonine-protein kinase PBS1-like 344 449 - -
Gabi696g00003 676 SUPERFAMILY Protein kinase-like (PK-like) 361 649 IPR011009 -
Gabi696g00003 676 Gene3D Phosphorylase Kinase; domain 1 342 449 - -
Gabi696g00003 676 Pfam Wall-associated receptor kinase C-terminal 174 250 IPR032872 -
Gabi696g00003 676 Gene3D Transferase(Phosphotransferase) domain 1 450 661 - -
Gabi696g00003 676 PANTHER RUST RESISTANCE KINASE LR10-RELATED 347 667 IPR045874 GO:0004672
Gabi696g00003 676 Pfam Wall-associated receptor kinase galacturonan-binding 40 106 IPR025287 GO:0030247
Gabi696g00003 676 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi696g00003 Gabi-Chr696 41330 52200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi696g00003 5 676 Receptor kinase-like Gene Family AT1G66910 37.784 1.99e-145 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi696g00003 PK_Tyr_Ser-Thr 8.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi696g00003 - - gmx:100792936 717.227