Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi696g00002 ATGCTTTTGTTCATCTTAACCAATTTGCCACAGTCCCATTCTCAAGAAGAAGAGACCAAATACACAAGCTGTAGCAGGCAGCCATACAACTGTGGAGATGTGTCCAACATCTTCTACCCTTTCTGGGGACACAACAGACCCCAATATTGTGGCGGTGGCCACCAATTAGATTTCAAACTTGAGTGTCAGAACGATAATACCACCGTTCTAATTGGCTCACCAAATTTCCAAGTTTTGCGTATCGACGCAACAGCTTACACCATTACAATGAAGCAAACGGTCGATGATGTTTGTTCTCCGACATTTTACGACACTTTCTTGGGTCTGGACCCAGCCTTCTTCGTGTATCCACCAACTGTGCACAACATCACAATTTTCTACAACTGTTCCTCTTTAGAATTCTCTGCTGCAGATAGATACGAATTCACGTGTGGAAATGAGAATGGTACCTATGGTGTGGGTGGGAAAGATGACGTGTTGAAAGAACATCCAGAGCTTCAGAATTGCGAGCGACATATCCAAGTGCCGATTCAGGTTCCTCTGGATGATATGAAAGGTGCTTTGGATGGTGGGTTTGAGGTGAACTATAATAATCCACACGGTAAAGAATGCAGACGATGTTCGGATAGTAAAGGAGTTTGTGGACACAATTCAACTTCTCATGAATTTACCTGTTTTTGCAAAGATGGATCATCTGATGCTATTGTTTGCTATGGTGGAGGTTCTAATAGTACTCGGTCGCACTTGCTACGGAAAATACTTACAGGATGCAAGTCCTCGTCTTGGCGTGGAAAATTTTGGTTGACCACAAAAGATAACAAAGATATTGAAGCATTCTTAAAAAATCATGGAGCCTTAACTCTAAAAAGATACAAATTCTCAGATGTCAAGAAAATGACCAACTCCTTCAAAAATAAACTTGGGCAAGGTGGTTTTGGTTCTGTATACAAAGGACAACTATTTAATGGTTGCCCTGTGGCTGTAAAGATATTGAGGTCATCGAAAGGAAACAATGAAGACTTCATCAACGAGGTTGCCAGTATCAGTAGCACTTCGCATGTCAATGTTGTCACCCTTCTTGGATTTTGTTTTGAAGGCCGCAAGAAAGCTCTCATCTATGAATTTATGTCCAATGGTTCCCTTGAAAAGTTTATTTACAGAAATGGACATGAAGCCGTTGCTTCTTTGAACTGGGAGGATTTGTATCAAATTGCCATGGGGATTGCTCGAGGGCTGGAGTACTTGCATAGGGGATGCAATACTAGAATTTTGCATTTTGACATAAAACCACATAATATCCTTTTGGATGAGAATTTCTGCCCCAAGATATCAGATTTTGGGCTAGCAAAGCTCTGTCCTAGGAAAGAGAGCATGATTTCAATGTCAGATGCTAGAGGGACAATTGGGTATGTAGCTCCAGAAATGTGGAATAGACATTTTGGAGGAGTATCTCATAAATCTGATGTTTATAGCTACGGAATGATGCTGCTAGAAATGGTGGGAGGGAGAAGGAACGTTAATGCTGACGCCAGTCACACTAGTGAGTTATACTTCCCACACTGGGTATACAACAGGCTTGAGCAAAGCAGTGATTTGAGGCCAGATGAGGTGATGAAAACAGAAGAAAATGAGATAGCAAAGAGATTGACCGTAGTGGGTTTATGGTGCACTCAAACGTTTCCAGATGATAGACCTACAATGAGTAGAGTGATAGATATGTTGGAAGGCAGCATGAATTCCCTCGAAATTCCACCAAAACCTATGTTATCTTCTCCTACTAGATCAGTGTCTGGATCCTCCACCTCTTGA 1809 0.4168 MLLFILTNLPQSHSQEEETKYTSCSRQPYNCGDVSNIFYPFWGHNRPQYCGGGHQLDFKLECQNDNTTVLIGSPNFQVLRIDATAYTITMKQTVDDVCSPTFYDTFLGLDPAFFVYPPTVHNITIFYNCSSLEFSAADRYEFTCGNENGTYGVGGKDDVLKEHPELQNCERHIQVPIQVPLDDMKGALDGGFEVNYNNPHGKECRRCSDSKGVCGHNSTSHEFTCFCKDGSSDAIVCYGGGSNSTRSHLLRKILTGCKSSSWRGKFWLTTKDNKDIEAFLKNHGALTLKRYKFSDVKKMTNSFKNKLGQGGFGSVYKGQLFNGCPVAVKILRSSKGNNEDFINEVASISSTSHVNVVTLLGFCFEGRKKALIYEFMSNGSLEKFIYRNGHEAVASLNWEDLYQIAMGIARGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRKESMISMSDARGTIGYVAPEMWNRHFGGVSHKSDVYSYGMMLLEMVGGRRNVNADASHTSELYFPHWVYNRLEQSSDLRPDEVMKTEENEIAKRLTVVGLWCTQTFPDDRPTMSRVIDMLEGSMNSLEIPPKPMLSSPTRSVSGSSTS 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi696g00002 602 FunFam PR5-like receptor kinase 376 586 - -
Gabi696g00002 602 Gene3D Phosphorylase Kinase; domain 1 266 375 - -
Gabi696g00002 602 Gene3D Transferase(Phosphotransferase) domain 1 376 583 - -
Gabi696g00002 602 Pfam Wall-associated receptor kinase C-terminal 162 230 IPR032872 -
Gabi696g00002 602 Pfam Protein tyrosine and serine/threonine kinase 303 574 IPR001245 GO:0004672|GO:0006468
Gabi696g00002 602 MobiDBLite consensus disorder prediction 581 602 - -
Gabi696g00002 602 PANTHER RUST RESISTANCE KINASE LR10-RELATED 272 591 IPR045874 GO:0004672
Gabi696g00002 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Gabi696g00002 602 ProSiteProfiles Protein kinase domain profile. 301 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00002 602 Pfam Wall-associated receptor kinase galacturonan-binding 24 91 IPR025287 GO:0030247
Gabi696g00002 602 SUPERFAMILY Protein kinase-like (PK-like) 287 575 IPR011009 -
Gabi696g00002 602 SMART serkin_6 301 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00002 602 CDD STKc_IRAK 307 576 - -
Gabi696g00002 602 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Gabi696g00002 602 FunFam serine/threonine-protein kinase PBS1-like 269 375 - -
Gabi696g00002 602 MobiDBLite consensus disorder prediction 584 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi696g00002 Gabi-Chr696 25123 28853 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi696g00002 29 601 Receptor kinase-like Gene Family AT1G66910 40.476 4.55e-147 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi696g00002 PK_Tyr_Ser-Thr 3.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi696g00002 - - gmx:100792936 704.516