Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi696g00001 ATGCTTTTGTTCATCTTAACCAATTTGCCACAGTCCCATTCTCAAGAAGAAGAGACCAAATACACAAGCTGTAGCAGGCAGCCATACAACTGTGGAGATGTGTCCAACATCTTCTACCCTTTCTGGGGACACAACAGACCCCAATATTGTGGCGGTGGCCACCAATTAGATTTCAAACTTGAGTGTCAGAACGATAATACCACCGTTCTAATTGGCTCACCAAATTTCCAAGTTTTGCGTATCGACGCAACAGCTTACACCATTACAATGAAGCAAACGGTCGATGATGTTTGTTCTCCGACATTTTACGACACTTTCTTGGGTCTGGACCCAGCCTTCTTCGTGTATCCACCAACTGTGCACAACATCACAATTTTCTACAACTGTTCCTCTTTAGAATTCTCTGCTGCAGATAGATACGAATTCACGTGTGGAAATGAGAATGGTACCTATGGTGTGGGTGGGAAAGATGACGTGTTGAAAGAACATCCAGAGCTTCAGAATTGCGAGCGACATATCCAAGTGCCGATTCAGGTTCCTCTGGATGATATGAAAGGTGCTTTGGATGGTGGGTTTGAGGTGAACTATAATAATCCACACGGTAAAGAATGCAGACGATGTTCGGATAGTAAAGGAGTTTGTGGACACAATTCAACTTCTCATGAATTTACCTGTTTTTGCAAAGATGGATCATCTGATGCTATTGTTTGCTATGGTGGAGGTTCTAATAGTACTCGGTCGCACTTGCTACGGAAAATACTTACAGGTATTATTGGTGGAGTGATAGCAGGATTGTTGATATGTATTACTATTTTTTGTTTAGGATGCAAGTCCTCGTCTTGGCGTGGAAAATTTTGGTTGACCACAAAAGATAACAAAGATATTGAAGCATTCTTAAAAAATCATGGAGCCTTAACTCTAAAAAGATACAAATTCTCAGATGTCAAGAAAATGACCAACTCCTTCAAAAATAAACTTGGGCAAGGTGGTTTTGGTTCTGTATACAAAGGACAACTATTTAATGGTTGCCCTGTGGCTGTAAAGATATTGAGGTCATCGAAAGGAAACAATGAAGACTTCATCAACGAGGTTGCCAGTATCAGTAGCACTTCGCATGTCAATGTTGTCACCCTTCTTGGATTTTGTTTTGAAGGCCGCAAGAAAGCTCTCATCTATGAATTTATGTCCAATGGTTCCCTTGAAAAGTTTATTTACAGAAATGGACATGAAGCCGTTGCTTCTTTGAACTGGGAGGATTTGTATCAAATTGCCATGGGGATTGCTCGAGGGCTGGAGTACTTGCATAGGGGATGCAATACTAGAATTTTGCATTTTGACATAAAACCACATAATATCCTTTTGGATGAGAATTTCTGCCCCAAGATATCAGATTTTGGGCTAGCAAAGCTCTGTCCTAGGAAAGAGAGCATGATTTCAATGTCAGATGCTAGAGGGACAATTGGGTATGTAGCTCCAGAAATGTGGAATAGACATTTTGGAGGAGTATCTCATAAATCTGATGTTTATAGCTACGGAATGATGCTGCTAGAAATGGTGGGAGGGAGAAGGAACGTTAATGCTGACGCCAGTCACACTAGTGAGTTATACTTCCCACACTGGGTATACAACAGGCTTGAGCAAAGCAGTGATTTGAGGCCAGATGAGGTGATGAAAACAGAAGAAAATGAGATAGCAAAGAGATTGACCGTAGTGGGTTTATGGTGCACTCAAACGTTTCCAGATGATAGACCTACAATGAGTAGAGTGATAGATATGTTGGAAGGCAGCATGAATTCCCTCGAAATTCCACCAAAACCTATGTTATCTTCTCCTACTAGATCAGTGTCTGGATCCTCCACCTCTTGA 1866 0.4132 MLLFILTNLPQSHSQEEETKYTSCSRQPYNCGDVSNIFYPFWGHNRPQYCGGGHQLDFKLECQNDNTTVLIGSPNFQVLRIDATAYTITMKQTVDDVCSPTFYDTFLGLDPAFFVYPPTVHNITIFYNCSSLEFSAADRYEFTCGNENGTYGVGGKDDVLKEHPELQNCERHIQVPIQVPLDDMKGALDGGFEVNYNNPHGKECRRCSDSKGVCGHNSTSHEFTCFCKDGSSDAIVCYGGGSNSTRSHLLRKILTGIIGGVIAGLLICITIFCLGCKSSSWRGKFWLTTKDNKDIEAFLKNHGALTLKRYKFSDVKKMTNSFKNKLGQGGFGSVYKGQLFNGCPVAVKILRSSKGNNEDFINEVASISSTSHVNVVTLLGFCFEGRKKALIYEFMSNGSLEKFIYRNGHEAVASLNWEDLYQIAMGIARGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRKESMISMSDARGTIGYVAPEMWNRHFGGVSHKSDVYSYGMMLLEMVGGRRNVNADASHTSELYFPHWVYNRLEQSSDLRPDEVMKTEENEIAKRLTVVGLWCTQTFPDDRPTMSRVIDMLEGSMNSLEIPPKPMLSSPTRSVSGSSTS 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi696g00001 621 Pfam Wall-associated receptor kinase C-terminal 162 230 IPR032872 -
Gabi696g00001 621 Gene3D Phosphorylase Kinase; domain 1 285 394 - -
Gabi696g00001 621 SUPERFAMILY Protein kinase-like (PK-like) 306 594 IPR011009 -
Gabi696g00001 621 Pfam Wall-associated receptor kinase galacturonan-binding 24 91 IPR025287 GO:0030247
Gabi696g00001 621 MobiDBLite consensus disorder prediction 603 621 - -
Gabi696g00001 621 FunFam PR5-like receptor kinase 395 605 - -
Gabi696g00001 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Gabi696g00001 621 CDD STKc_IRAK 326 595 - -
Gabi696g00001 621 Pfam Protein tyrosine and serine/threonine kinase 322 593 IPR001245 GO:0004672|GO:0006468
Gabi696g00001 621 ProSiteProfiles Protein kinase domain profile. 320 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00001 621 MobiDBLite consensus disorder prediction 600 621 - -
Gabi696g00001 621 FunFam serine/threonine-protein kinase PBS1-like 288 394 - -
Gabi696g00001 621 PANTHER RUST RESISTANCE KINASE LR10-RELATED 291 610 IPR045874 GO:0004672
Gabi696g00001 621 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Gabi696g00001 621 SMART serkin_6 320 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi696g00001 621 Gene3D Transferase(Phosphotransferase) domain 1 395 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi696g00001 Gabi-Chr696 25123 28853 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi696g00001 29 620 Receptor kinase-like Gene Family AT1G66910 40.188 2.56e-149 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi696g00001 PK_Tyr_Ser-Thr 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi696g00001 - - gmx:100792936 716.457