Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi693g00012 ATGGATCCTCCACCAAAGAGCTGGAGTATCCATACCCGATCCGAGATATCGGCGAAATACGAGGTTCTGGAGCGGGTCGGGTCGGGTGCATACGCCGACGTGTACCGTGGGCGGCGTTTATCGGACGGCTCGGCGGTGGCGCTGAAGGAGGTCCACGACTACCAATCGGCGTTCAGGGAAATCGAGGCGTTGCGGGTCCTTCAGGGGTCACAAAACGTCGTCGTAATGCACGAGTTCTTCTGGCGTGAGGATGAGAATGCAGTGATCGTGCTCGAGTTTCTGAGAACCGACCTCGCCACCGTGATCAAGGAAGCTTCTGCTGCTGCTAATGGTGGTGGCCTTGGTATTGGGGAGGTTAAGAGGTGGATGATGCAGGTTCTTAGTGGGGTTGATGCGTGCCATAGGAACATGATTGTGCATAGGGACTTGAAGCCTTCGAATTTGTTGATTTCCGATGATGGGGTGCTCAAATTGGCAGATTTTGGACAGGCAAGGATACTTATGGAGCCTGGATTTGATGCTAGGGAGGAGAACACACTACCATACGAGCATGATGTTTCAAATCGTGAAACTTCACTCCAACATCTTCAAGAGCATGGAACCGTGAGTCACGAAGAATATTTTAGAGTTTTAGATGAGATGAAAACTAACATCTCCACATATGACACTGATAAGGATACATACGTTCAAGATGGTAATACCTCATGTCTTGCAACATGCACAACAAGTGACATAGATGATGATATCTGGAAAGCTTCATTCACATATGAAGCAGATGAAGAGGGAGGGAATGAACTTGGTTGTCTCACATCATGTGTTGGAACTCGTTGGTTCAGGGCTCCTGAACTACTTTATGGATCCACAGACTATGGTTTAGAGGTTGATCTTTGGTCATTGGGATGTGTCTTTGCTGAGCTCTTAACTCTGAATCCCTTGTTTCCTGGAACATCTGATATAGATCAACTTAGCAGGATTATAAGTGTTTTGGGCAACCTCAATGAGGAAGCATGGCCTGGTTGTTCAAAACTTGCTGATTATGCAAGAATCTCATTTGGGAAGGTGGAAAACCCTACTGGTCTTGAAGCCTGCATGCCCAATTGCTCTTCTGATGAAGTTTCTCTTGTCAAAAGATTGGTTTGTTATGATCCAGCTAGGAGAGCCACAGCAATGGAGTTACTGCATGACAAGTACTTCAGTGAAGAACCTCTTCCTGTTCCTATTTCTGAGCTGAGAGTTCCTTTGACCAGATATGGACAAGACCAGGATTCCCTTGATGGGTTTCATGGTTACAATGAAAGGGGTTCTGATTCTGATTTTGAGGACTTTGGTACTATGAATACCACCAAAACTGGTGCTGGTGCTGGTTTCTCTATACAGTGA 1380 0.4645 MDPPPKSWSIHTRSEISAKYEVLERVGSGAYADVYRGRRLSDGSAVALKEVHDYQSAFREIEALRVLQGSQNVVVMHEFFWREDENAVIVLEFLRTDLATVIKEASAAANGGGLGIGEVKRWMMQVLSGVDACHRNMIVHRDLKPSNLLISDDGVLKLADFGQARILMEPGFDAREENTLPYEHDVSNRETSLQHLQEHGTVSHEEYFRVLDEMKTNISTYDTDKDTYVQDGNTSCLATCTTSDIDDDIWKASFTYEADEEGGNELGCLTSCVGTRWFRAPELLYGSTDYGLEVDLWSLGCVFAELLTLNPLFPGTSDIDQLSRIISVLGNLNEEAWPGCSKLADYARISFGKVENPTGLEACMPNCSSDEVSLVKRLVCYDPARRATAMELLHDKYFSEEPLPVPISELRVPLTRYGQDQDSLDGFHGYNERGSDSDFEDFGTMNTTKTGAGAGFSIQ 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi693g00012 459 Gene3D Transferase(Phosphotransferase) domain 1 108 404 - -
Gabi693g00012 459 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Gabi693g00012 459 FunFam Cyclin-dependent kinase F-1 11 105 - -
Gabi693g00012 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Gabi693g00012 459 PANTHER CELL DIVISION PROTEIN KINASE 19 404 - -
Gabi693g00012 459 Gene3D Phosphorylase Kinase; domain 1 11 107 - -
Gabi693g00012 459 ProSiteProfiles Protein kinase domain profile. 20 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi693g00012 459 Pfam Protein kinase domain 20 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi693g00012 459 Pfam Protein kinase domain 269 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi693g00012 459 SMART serkin_6 20 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi693g00012 459 SUPERFAMILY Protein kinase-like (PK-like) 14 404 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi693g00012 Gabi-Chr693 90479 92636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi693g00012 4 459 Core Cell Cycle Gene Families AT4G28980 62.737 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Gabi693g00012 Pkinase 3.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi693g00012 - - gmx:548056 714.916