Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi692g00003 ATGATTGAAGAAAGTGGTTGCTTTGATCCCAATGCAATGATGGTACTGGGCACAGGAGTAGCAGGCCCATCAGAAGACTGCTTCGCCCAAATCGTTTCAGAGTCAGACCCACCACTTCAGGCAGTTATGACTGGCACTGGCACTGGCACTGGCACAGAGATCCAAAACAGCTTTGCAGAGAATGTGGGTATTTCTGCGGAAAACTTATCATACCCATATTCCTGTGGAGAAGATGTTATAATTGCTACCGGTACCCTAACAAATAGAGTTGATGCTACCGCTGGCACCCGAATGGATGCACATCCACAACAAATGGGTTTTCACATGGAAAATCCATACCATCATAGCAATAACTTCAACAGTACCCATTTAGTGGAAGAGGTCAATAACAATCATGTTTCAAGTCAGGACCTTTCCTTTGACCAGTCCAACTGGGACAAATATCAAAGGGTTTCCAACAGTCACCATCACCAAAATCACCATCATCATCATCAGCAATTATCTTATCCCGCATCAACACCAGATCTCCTTAACCTTCTCCACTTACCCAGAAGCCCAGCTTCTCCATTTGGGAACTCCTCTATCTCTTTTGAAAACCCAACCCACAACACCACCAATCTTTCAAAACCCACCTCTGGCCATGCCACCTGGGTTGGTAACTGTCCTATGGGGCCTGACAGTACAAACGGGTCATCTGTTTCCTATGACCCTTTCTTGCATTTGAACCTGCAAGTACCTCCGCCAGCTGTAAACAGAAAGTTGTTTCAGCCTCTACCCCATGGCTACACCATGACAGCTTCAAGAAATGATTTTGTCTTTAGCGGAGGGGATGACATACAAGGTAGTGGGGTTGCCTATCAAGATGGAGATGGGAGAGATTTTGATAATGGAGTGCTAGAGTTAACCAAGGATGTGGCTTATGTAGGTAAAAAGAGAGGAGGGAAAAGGACCAAGCATTTCACCAGTACAACTGAGAAACAAAGGAGAGTGGATTTGAGTAGCAAATTTGATGCCTTGAAAGAACTCATCCCAAACCCTTCCAAGAGTGATAGAGCATCTGTGGTGGGAGATGCTATCGACTATATTCGAGAGCTTCTAAGGACAGTGAACGAGCTCAAATTATTGGTTGAGAAGAAAAGGCACGAGAAAAAAAGGATCAAGGGGCACAAGCTTGAAGAAGGAGCCACTCAAGGTGACTTGGAGGGCTGCAACTTGAAGCTGGTTGCAATTGGCGACCCAGATGACCGCTCCTTAAATGAAAGCTTAAGAAGTTCTTGGATCCAAAGGAGATCCAAAGACACTGAAGTTGATGTACACATTATTGACAATGAGGTAACAATAAAGCTTGTTCAAAGGAAGAAAATCAATTGCTTGGTGTATGCTTCACAGGTTCTGGAGGAATTTAAGCTGGATCTCCAGCATGTTGCCGGTGGCCACATTGGCGATTTCTGCAGCTTTATGTTCAATGGCAAGATATGTGAAGGTTCCTCAGTTTATGCGAGTGCCATAGCCAACAAGCTCATTGAGATCATCGACAGAAGTTTGACAGCAGCGTGA 1557 0.4489 MIEESGCFDPNAMMVLGTGVAGPSEDCFAQIVSESDPPLQAVMTGTGTGTGTEIQNSFAENVGISAENLSYPYSCGEDVIIATGTLTNRVDATAGTRMDAHPQQMGFHMENPYHHSNNFNSTHLVEEVNNNHVSSQDLSFDQSNWDKYQRVSNSHHHQNHHHHHQQLSYPASTPDLLNLLHLPRSPASPFGNSSISFENPTHNTTNLSKPTSGHATWVGNCPMGPDSTNGSSVSYDPFLHLNLQVPPPAVNRKLFQPLPHGYTMTASRNDFVFSGGDDIQGSGVAYQDGDGRDFDNGVLELTKDVAYVGKKRGGKRTKHFTSTTEKQRRVDLSSKFDALKELIPNPSKSDRASVVGDAIDYIRELLRTVNELKLLVEKKRHEKKRIKGHKLEEGATQGDLEGCNLKLVAIGDPDDRSLNESLRSSWIQRRSKDTEVDVHIIDNEVTIKLVQRKKINCLVYASQVLEEFKLDLQHVAGGHIGDFCSFMFNGKICEGSSVYASAIANKLIEIIDRSLTAA 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi692g00003 518 Gene3D - 311 390 IPR036638 GO:0046983
Gabi692g00003 518 Pfam Helix-loop-helix DNA-binding domain 323 365 IPR011598 GO:0046983
Gabi692g00003 518 CDD bHLH_AtMYC1_like 321 381 IPR045896 -
Gabi692g00003 518 PANTHER TRANSCRIPTION FACTOR BHLH91 3 515 IPR045895 GO:0006355|GO:0048658
Gabi692g00003 518 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 365 IPR011598 GO:0046983
Gabi692g00003 518 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 381 IPR036638 GO:0046983
Gabi692g00003 518 SMART finulus 322 371 IPR011598 GO:0046983
Gabi692g00003 518 Coils Coil 362 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi692g00003 Gabi-Chr692 142341 144124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi692g00003 132 518 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G06170 38.760 3.20e-73 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi692g00003 HLH 6.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi692g00003 - - vra:106767981 443.736