Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi68g00001 ATGGGTGGTGAAGAGTTCGCCGGAGAATCCAACACGGCGGAGGCACTCACCGGAGCTTCCCGCCTCCGGCGAGCCGTCGAGCTCATCTGCTCCTTGCTCTCTCTCTCTCACTCGATCAAGGTCTTCGCCGGAAAATGGAAACTCATTCGGAACAAGCTGGAAGAGCTTCACTCCGGTCTAATCGCCGCCGATAACTGCGATTCCGGCGAGAACCCATCGCTCTCTCGGTTGGTTTCTTCGATTGTGGCCACCGTGAAGGAGTGCGACGATCTGGGTCGGCGCTGCGTCGATTTCTCCTACAGTGGGAAGCTACTGATGCAGAGTGATTTGGATGTGGCGTTCGCGAAGCTCGATGGACACGCGAAGAAGCTTTCGGAGATATACAAGACGGGTATTTTGACAAATGGGTATGCGCTCGTTGTGTCAAAACCGAGTCTTGGAGCTTCCAAAGAGGATGTGAGGTTCTACGTGAGGGACTTGTTGACGAGGATGAAGATTGGTGATTTGGATATGAAGAAACAGGCCTTGAGGAATCTTCTTGAGGTTGTGGTGGAGGATGGGAAGTATGTGAAGGTGGTTGTGGATGTGGGTGATGTTGTTCATGTGCTGGTGAGTTTCCTGGGTTCCACTGAGGTTGAAATCCAAGAAGAAAGTGCTAAGGTGGTTTGTGTGGTTGCGGGTTTTGATTCCTATAAAGGTGTTTTGGTTGGTGCCGGGGTTATTGCGCCGTTGATTCGGGTTTTGGATTGTGGTAGTGAGTTGGGGAAGGTTTGGGCTGCGAGATGTTTGATGAAATTGACTGAGAATTCGGAAAATGCTTGGTCTGTTTCGGCTCATGGAGGTGTCACTGCCTTGTTGAAAATTTGTGGTAATGAAGATTGTAAAGGGGATTTGGTTGGTCCTGCTTGTGGGGTGTTGAGAAATCTTGTTGGTGTTGAGGAAATAAAGAGGTTTGTGGTTGAGGAGGGTGCTGTGACCATGTTTATCAGGCTTGTGAGATCCAAGGAGGAAGCAATTCTGGTGAATTCCATAGGGTTCATTCAGAATATTGCCTCTGGGGATGAGTTGGTTAGGCAGATGGTGATTAGAGAAGGTGGAATCCGTGCTTTGTTACGTGTTTTGGATCCTAAATGGTCGTATTCTTCTAAAAGCAGGGAGATAGCAATGAGGGCTGTTGAGAATTTGTTTTTTTCTTCATCTAGTTCTGTAAGTGTTTTGATGAGTTATAGTTTTGTGGATCAGCTGCTATGTTATATTCGAAATGGGGAGGTTTCAATTCAAGAGTTGTCTCTGAAAGTGGCATTTAGATTGTGTGGAACATCGGAGGAGGCTAAGAAAGTAATGGGTGATGCAGGTTTTATGCCAGAGTTTGTTAAGTTTTTAAATGCAAAATCTTTTGAAATTCGTGAAATGGCTGCGGAGGCACTCTCTGGCATGGTTAAGGTACCTAGAAATAGGAAGAGATTTGTGCAGGATGACCATAATATGGCCCTTCTTCTGCAATTGCTTGACCCGGAGGAGGGAAATTCAGGTAACATAAAGTTCTTAATCTCTATCTTGATGTCATTAACAAGTTGCAACAGTGGGAGGAAAAAGATTGTTAGTTCTGGATATGCCAAAAACATAGAAAAACTTGCAGAGGCTGAAGTTTCTTCTGATGCCAAGAGACTTGTGAGGAAGCTATCATCAAACCGGTTCCGCAATATGTTAAGTGGAATCTGGCACTCATGA 1731 0.4604 MGGEEFAGESNTAEALTGASRLRRAVELICSLLSLSHSIKVFAGKWKLIRNKLEELHSGLIAADNCDSGENPSLSRLVSSIVATVKECDDLGRRCVDFSYSGKLLMQSDLDVAFAKLDGHAKKLSEIYKTGILTNGYALVVSKPSLGASKEDVRFYVRDLLTRMKIGDLDMKKQALRNLLEVVVEDGKYVKVVVDVGDVVHVLVSFLGSTEVEIQEESAKVVCVVAGFDSYKGVLVGAGVIAPLIRVLDCGSELGKVWAARCLMKLTENSENAWSVSAHGGVTALLKICGNEDCKGDLVGPACGVLRNLVGVEEIKRFVVEEGAVTMFIRLVRSKEEAILVNSIGFIQNIASGDELVRQMVIREGGIRALLRVLDPKWSYSSKSREIAMRAVENLFFSSSSSVSVLMSYSFVDQLLCYIRNGEVSIQELSLKVAFRLCGTSEEAKKVMGDAGFMPEFVKFLNAKSFEIREMAAEALSGMVKVPRNRKRFVQDDHNMALLLQLLDPEEGNSGNIKFLISILMSLTSCNSGRKKIVSSGYAKNIEKLAEAEVSSDAKRLVRKLSSNRFRNMLSGIWHS 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi68g00001 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 280 324 IPR000225 GO:0005515
Gabi68g00001 576 SMART arm_5 354 397 IPR000225 GO:0005515
Gabi68g00001 576 SMART arm_5 186 227 IPR000225 GO:0005515
Gabi68g00001 576 SMART arm_5 228 268 IPR000225 GO:0005515
Gabi68g00001 576 SMART arm_5 312 352 IPR000225 GO:0005515
Gabi68g00001 576 SMART arm_5 441 481 IPR000225 GO:0005515
Gabi68g00001 576 SMART arm_5 269 311 IPR000225 GO:0005515
Gabi68g00001 576 SUPERFAMILY ARM repeat 158 558 IPR016024 -
Gabi68g00001 576 Gene3D - 156 568 IPR011989 -
Gabi68g00001 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 366 IPR000225 GO:0005515
Gabi68g00001 576 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi68g00001 Gabi-Chr68 8871 11126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi68g00001 140 428 U-box Gene Family AT2G23140 26.117 9.74e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi68g00001 - - gmx:100809382 875.93