Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi689g00007 ATGGCTTCCTATAAGATTTTCTTCCCCATTATCCTTGTTAGCATATTCAGTTTTATAACTACTGAAGCACTTGACGACCCTCTTTATCTATACCATTATTGCTCCAGCAACAGAACCACAACCAATACCTCATTCGAATTGAACCTTAGGACTCTCCTTTCTTCCTTAACATCTAACGCCACTGGCAGCACCCAATTCTACAACACCACATTCATTGGCGAAAACCCCTCAGACTCAATCTATGGATTGTTCATGTGCAGGTGTGACATCCCCTCTCAGCTCTGTCAACAATGTGTTATAAATGCAACCCAGAAACTTTCCTCAGAGTGCTCCTTATCCAAAGAAGGTGTGATTTGGTACGACGAGTGCATGGTTTGGTATTCCACCACCTATTTCTTCTCCACCCTTGCCACAAAGCCTAGTTTTTACCTGTTGAACACAGACAATGTCTCAAACCCTGAAAGCTTCATGCATTTATTGTTTTTGACCATGAATGAAACTGCTGATGAAGCAGCTCGTGCTCCTATTGGTCACAAGAAATATGCAACAAAGGAAGCAATTGTGTCTGGATTTCGATCCCTTTATTGTCTAGCTCAGTGCACACCAGATCTTTCACTCCATGATTGCAGAACATGTCTTAGTGGAGCAATAATGGAACTTTCATCGTGCTGTGAAGGAAGGATAGGTGGTGGAGTTCTTAACCCAAGCTGTAATATTAGGTATGAAATGTACCCCTTTTATCTCTCCTCTGTTCCCTCATCAATGCCTGCACCAATGCTTGTTCCTGTAACACATACTTCAGATGCAGATACAAGATTTTCAGAAGACCCTGTTTATCTTTCACACAATTGTTCAAGTAATAAAACCTTCACTACCAACAGCACTTTCCAAATATACCTCAAGACCCTCTTCTCTTACTTGTCTTCCAATGCTACCAGTGGCAATGGATTTCATAACGTTAATGTTGCTGACACAGTGTTTGGCCTCTTCATGTGCCGAGGTGATGTCCCCTCTCTTCTCTGTGAACAATGTGTCCTAAACGCAACACATCAAATATCCTCAGAGTGCCACTTGTTCCAAGAGGCTATAATTTGGTACAGTCACTGTTTGCTTCGTTATTCCTATTGGAATTTCTTCAGCGTAGTAAACAGAAGTCCTATATTTTTCAAGTTGAATATCACCAGTACCTCAAGCCCCAATCAGGAGCAAAGCTTCTTCAATTTTGCAGTATCGAATGCATTATCAGAAGTGGCAATCATGGCAGGGGACAGTGACAAGAGATATGGAACAAAGTCATTAAAGTTGAATGACTTACAAACCGTTTATAGTCTTGCTCAATGTACACAAGATTTGTCTAGTGATGATTGCAAGGGGTGTCTAGCAGATGTCATTGGAACAGAAATCCCATGGTCTCATTTGGGAAGCGTAGTGGGGAGAGTTCTATATCCTAGCTGCAATCTCAGGTTTGAATTGGTCCAATTTTACAGAGATGGTGACCAAGCTCAGCCACCCACGCCAGCTAGTCCTTCTCCATCAAGACCCGCAGAAAAAATGAAGGGCCGGTCTAGAACAATAATATTGATTGTTGTGCCCACATTTGTTTCGGTGTTGTTCTTCTTGTTTGGCTGCTATGTTCTAAAGAGAAAAGCACGAAAGAGCCATAAGACTATTCTTAGAGAAAACTTTGGTCATGAAAGTTTCACTCTGGAGCAGCTGCAATTCGATTTGGCTGTGATTGAAGTAGCAACCAATGACTTTTCAGATGAGCATATGATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTCTTGATGGACGACAAATAGCTGTAAAAAGACTCTCAAGAAGTTCTAAACAAGGTGTTAATGAGTTCAAGAATGAAGCTTTATTGATAGCGAAGCTTCAACATAGAAATATAGTGGAATTCATTGGCTTTTGTGTTGATGAACGAGAGAAAATGCTTATTTATGAATATGTGCCCAATAGGAGCCTTGACTACTTTTTATTTGATTCTCAGAGGAAAAAGTTGTTAAGCTGGTTTGAACGTTATAATATTATACGAGGAATTGCTCAAGGAATTCATTATCTACATGAACATTCTCGACTCAAAGTTATACATCGTGACCTAAAACCTAGTAATGTTCTCTTAGATGGCAATATGATTCTAAAAATTTCTGATTTCGGTTTGGCTAGAATTGTTGAAATGAATGAAGACCATGGAAGTACAAATAGAATTTTTGGAACATATGGTTATATGTCTCCGGAATACGCAATGCTCGGGCAATTTTCTGAGAAATCAGATGTCTTTAGTTTTGGAGTCATGGTTTTAGAGATTATTACTGGAAAAAAGAATGTAGGTTCATATGAATCACATTGTGTTGCTGGTGGCCTCTTGAGTTATGTTTGGAGACAGTGGAAGGATCAAACACAACTAAGTATATTGGACTCGTATATTAAGGAAAATTATTATGAAATTGAAGTCATTAAGGGCATTCAAATTAGTTTATTATGTATTCAACAGGACCCTAATGCTAGACCTACAATGGCAATCGTTGTTTCATATCTTAGCAGTGATTTTATTGAATTACCAACTCCACAAGAACCTGCATTTGTCTTGCACAATGAAATGAGTCCAAAATCATTTGTAGATGAATCATGTTCCAGTCAATCTATCAACAATCCCACACCATTCTCTATCAATGAAATGTCTATAACCGAATATCTTCCTCGATAG 2742 0.3917 MASYKIFFPIILVSIFSFITTEALDDPLYLYHYCSSNRTTTNTSFELNLRTLLSSLTSNATGSTQFYNTTFIGENPSDSIYGLFMCRCDIPSQLCQQCVINATQKLSSECSLSKEGVIWYDECMVWYSTTYFFSTLATKPSFYLLNTDNVSNPESFMHLLFLTMNETADEAARAPIGHKKYATKEAIVSGFRSLYCLAQCTPDLSLHDCRTCLSGAIMELSSCCEGRIGGGVLNPSCNIRYEMYPFYLSSVPSSMPAPMLVPVTHTSDADTRFSEDPVYLSHNCSSNKTFTTNSTFQIYLKTLFSYLSSNATSGNGFHNVNVADTVFGLFMCRGDVPSLLCEQCVLNATHQISSECHLFQEAIIWYSHCLLRYSYWNFFSVVNRSPIFFKLNITSTSSPNQEQSFFNFAVSNALSEVAIMAGDSDKRYGTKSLKLNDLQTVYSLAQCTQDLSSDDCKGCLADVIGTEIPWSHLGSVVGRVLYPSCNLRFELVQFYRDGDQAQPPTPASPSPSRPAEKMKGRSRTIILIVVPTFVSVLFFLFGCYVLKRKARKSHKTILRENFGHESFTLEQLQFDLAVIEVATNDFSDEHMIGKGGFGEVYKGILLDGRQIAVKRLSRSSKQGVNEFKNEALLIAKLQHRNIVEFIGFCVDEREKMLIYEYVPNRSLDYFLFDSQRKKLLSWFERYNIIRGIAQGIHYLHEHSRLKVIHRDLKPSNVLLDGNMILKISDFGLARIVEMNEDHGSTNRIFGTYGYMSPEYAMLGQFSEKSDVFSFGVMVLEIITGKKNVGSYESHCVAGGLLSYVWRQWKDQTQLSILDSYIKENYYEIEVIKGIQISLLCIQQDPNARPTMAIVVSYLSSDFIELPTPQEPAFVLHNEMSPKSFVDESCSSQSINNPTPFSINEMSITEYLPR 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi689g00007 913 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 27 131 - -
Gabi689g00007 913 Gene3D - 27 132 IPR038408 -
Gabi689g00007 913 Gene3D - 138 246 IPR038408 -
Gabi689g00007 913 Gene3D - 389 494 IPR038408 -
Gabi689g00007 913 Gene3D - 277 378 IPR038408 -
Gabi689g00007 913 SUPERFAMILY Protein kinase-like (PK-like) 566 858 IPR011009 -
Gabi689g00007 913 FunFam cysteine-rich receptor-like protein kinase 10 662 865 - -
Gabi689g00007 913 ProSitePatterns Serine/Threonine protein kinases active-site signature. 707 719 IPR008271 GO:0004672|GO:0006468
Gabi689g00007 913 ProSiteProfiles Gnk2-homologous domain profile. 388 494 IPR002902 -
Gabi689g00007 913 ProSiteProfiles Gnk2-homologous domain profile. 278 378 IPR002902 -
Gabi689g00007 913 Pfam Protein tyrosine and serine/threonine kinase 589 857 IPR001245 GO:0004672|GO:0006468
Gabi689g00007 913 ProSiteProfiles Protein kinase domain profile. 586 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi689g00007 913 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 547 661 - -
Gabi689g00007 913 ProSitePatterns Protein kinases ATP-binding region signature. 592 614 IPR017441 GO:0005524
Gabi689g00007 913 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 271 909 - -
Gabi689g00007 913 FunFam Cysteine-rich receptor-like protein kinase 25 386 494 - -
Gabi689g00007 913 SMART serkin_6 586 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi689g00007 913 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 277 377 - -
Gabi689g00007 913 CDD STKc_IRAK 592 858 - -
Gabi689g00007 913 Gene3D Phosphorylase Kinase; domain 1 546 661 - -
Gabi689g00007 913 FunFam Cysteine-rich receptor-like protein kinase 25 140 246 - -
Gabi689g00007 913 Pfam Salt stress response/antifungal 284 374 IPR002902 -
Gabi689g00007 913 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Gabi689g00007 913 Pfam Salt stress response/antifungal 400 490 IPR002902 -
Gabi689g00007 913 Pfam Salt stress response/antifungal 151 243 IPR002902 -
Gabi689g00007 913 Gene3D Transferase(Phosphotransferase) domain 1 662 864 - -
Gabi689g00007 913 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Gabi689g00007 913 ProSiteProfiles Gnk2-homologous domain profile. 138 246 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi689g00007 Gabi-Chr689 143039 153904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi689g00007 274 913 Receptor kinase-like Gene Family AT4G05200 42.470 2.33e-176 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi689g00007 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi689g00007 - - gmx:100806048 1279.23