Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi687g00013 ATGGGGCATAGACATTTATATAACAAATCTCCATTGTTTGAGAGTGAACCTGACCAGAACTGGAATCATATGCATACTGATCAACATTATGTGCCCCTTGGTAGGACTAGCACTACAGACAATGGTTCTTTCATTTATCCTTTGGAAAATATGTCCATAGATGGCATTTCTTTTCCATCTCATTGGAACTCTGCGACAAGGTCAAATGGATATGCATCCTCAAGTCTCAACATTGAAGCACCCCCTCATCAATCAGATGCATCAGGCACTAATAATGAACATTTTCTGCACTCATCAAGTGCTGGAACTTTCTTTGCAGTGTCTGAAAATTATGTACACCAGCCTTCTAATTCCAATTATGACAGACAAGCATTCCCTGTTGGTGATGGTGGTTTTATTGATCTTACAATGGGAAGTGGACGAGGGCCTCACAAGAGGAAGAGTCCTGGAATTCCTCCGGTCTGTGAGAGAGGCAGTACAAGCAGATACTTTAATACTGGAAGTGCAGCTGATTTTCCTACACCTTCAGAAATACGGCCAGAGAAGCCAAATATGGATTCTCTATATATGCCTTGGGATCATGTTACTATGACACCCGCTTTCAGAGGTAGTGGCCTTTCAATAAGGGATGAGGGCTCTTTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAGTCTAACCTGGCTAGGACTCATTTATCGAGCAATCATTCACACAACTCATACACTACTGGCCCACCAATTGACCATTCTGGCACGGTCGATCTATCAACTCAAACTTCTAGCACTTTGACGAGGGATTGGAGCCAAATGAGTATGTGTCCTGCTCATGGTAGGGTGTTATCATCAGATGCAAATGCTTTTAGTCATGAGACAAGTCATTTCCTTGTTGGAAGTGGTTCTAGTAATGCTCCTGTAGATGTTGGGAGTTTCCATCATGAATTTGGTACAAGCAGAAATCCTACTGCTCCTCAAAGTTTTCATAATAATCTGACTCAATCTGCTAGGGGAGTTCGCAGTAACTATTCTCAAAGATCCGCTCCAACTTTTAGGGCTTCTTCAAGCTTGCGCTTGGGACATGTGACACCTTCAGATGATGGATTGCATATGGTTGCTGAAAGTTACTCTTCTAGGCATCCAAGGCCATTGACCACCATTGGCTGGCGTAACAGTGATAGAAATGGGAGGTCAAGGATATCTAGTGATAGATATCGATCATTGGCCAATGAGATTGGTCTCAATGATCGATTTTCCTCTGAGGGTTTCATGATTGTTGATCGTGCTTCACTGTATGGTTCTAGGAATGTGCTTGATCAGCATAGAGACATGAGAATGGACATAGACAACATGAGCTACGAGGAACTACTTGCACTTGGAGAGCGAATTGGCCATGTGAGTATAGGAGTATCTGAGGATTTGATTTCCAAGTGTTTGAGAGAAACAATATACTGTTCGTCTGAGCTAAGTCAAGAAGAAGGAACTTGTGCAATTTGTCTGGAGGAATACAAGAACATGGACGATGTTGGGACACTGAAAACTTGTAGTCATGAATACCATGTGAGCTGCATTAGAAAGTGGTTAACTATGAAAAACATATGTCCTATTTGCAAAGCTTCTGCTTTGCCTGATGATACGAAGGATAAATAA 1650 0.4218 MGHRHLYNKSPLFESEPDQNWNHMHTDQHYVPLGRTSTTDNGSFIYPLENMSIDGISFPSHWNSATRSNGYASSSLNIEAPPHQSDASGTNNEHFLHSSSAGTFFAVSENYVHQPSNSNYDRQAFPVGDGGFIDLTMGSGRGPHKRKSPGIPPVCERGSTSRYFNTGSAADFPTPSEIRPEKPNMDSLYMPWDHVTMTPAFRGSGLSIRDEGSLRNVRSRSALDLESNLARTHLSSNHSHNSYTTGPPIDHSGTVDLSTQTSSTLTRDWSQMSMCPAHGRVLSSDANAFSHETSHFLVGSGSSNAPVDVGSFHHEFGTSRNPTAPQSFHNNLTQSARGVRSNYSQRSAPTFRASSSLRLGHVTPSDDGLHMVAESYSSRHPRPLTTIGWRNSDRNGRSRISSDRYRSLANEIGLNDRFSSEGFMIVDRASLYGSRNVLDQHRDMRMDIDNMSYEELLALGERIGHVSIGVSEDLISKCLRETIYCSSELSQEEGTCAICLEEYKNMDDVGTLKTCSHEYHVSCIRKWLTMKNICPICKASALPDDTKDK 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi687g00013 549 CDD RING-H2_RNF24-like 494 541 - -
Gabi687g00013 549 MobiDBLite consensus disorder prediction 71 92 - -
Gabi687g00013 549 Pfam Ring finger domain 495 538 IPR001841 -
Gabi687g00013 549 ProSiteProfiles Zinc finger RING-type profile. 496 538 IPR001841 -
Gabi687g00013 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 542 IPR013083 -
Gabi687g00013 549 MobiDBLite consensus disorder prediction 234 263 - -
Gabi687g00013 549 SMART ring_2 496 537 IPR001841 -
Gabi687g00013 549 SUPERFAMILY RING/U-box 485 543 - -
Gabi687g00013 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 117 542 IPR045191 GO:0061630
Gabi687g00013 549 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 461 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi687g00013 Gabi-Chr687 153986 161482 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi687g00013 1 548 C3H Transcription Factor Family AT2G37150 42.086 2.39e-118 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi687g00013 - - gmx:100786013 935.636