Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi687g00010 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATCACCTTGGAGGTGGAGTCCTCCGACACGATCGACAACGTGAAAGCGAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCAACAGCGATTGATCTTCGCAGGGAAGCAATTGGAGGATGGAAGGACCCTGGCGGATTACAACATCCAGAAGGAGTCGACTCTTCATCTTGTGCTTCGTCTCCGTGGCGGGATGCAGATCTTCGTGAAGACGCTAACTGGAAAGACGATTACGCTTGAGGTGGAGAGTTCTGATACGATTGATAATGTTAAGGCGAAGATTCAGGATAAGGAAGGGATTCCACCGGACCAACAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGACGAACTCTTGCTGATTATAATATTCAGAAAGAATCTACGCTTCACCTTGTCCTCAGGCTCCGTGGTGGGGATGTTTAA 465 0.4903 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDV 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi687g00010 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Gabi687g00010 154 FunFam Polyubiquitin 3 77 152 - -
Gabi687g00010 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Gabi687g00010 154 Gene3D - 77 154 - -
Gabi687g00010 154 Gene3D - 1 76 - -
Gabi687g00010 154 PANTHER UBIQUITIN 1 80 - -
Gabi687g00010 154 CDD Ubl_ubiquitin 1 76 - -
Gabi687g00010 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Gabi687g00010 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Gabi687g00010 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Gabi687g00010 154 CDD Ubl_ubiquitin 77 152 - -
Gabi687g00010 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Gabi687g00010 154 FunFam Polyubiquitin 3 1 76 - -
Gabi687g00010 154 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Gabi687g00010 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Gabi687g00010 154 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Gabi687g00010 154 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Gabi687g00010 154 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Gabi687g00010 154 SMART ubq_7 1 72 IPR000626 GO:0005515
Gabi687g00010 154 SMART ubq_7 77 148 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi687g00010 Gabi-Chr687 148717 149357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi687g00010 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.20e-50 156