Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi686g00002 CAAAGTGATGAGCATGTTTACAAATCGTTCTTGAACATTTCCAATATGTACCGCAAAGAGCATAAGGACATAGGTGAAATTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTTCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGCAAATGCAAGTATATCGACGAAAGAGGCTTCCTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAACACCCTGAGATGGATGATGACAACACAATGATGAACATGCACAAGAAGCGGAGGAAACGTGAGAGTAAGGATATGAGGATTAATCGTGATCAGGATGAGAGAGAACCTGATAATAATAACAGCAGGGATTTGAACTTGCAGCGCTTTCATGAGAAAAAGAAATCTATCAAGAAAGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTTTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATAATTTTTTCGTCAGTGAAATAATAAAAAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATCTTGATCTTATGGTGGAATTCAATGATTTCCTGGAGTGTTTGGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGGAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTCCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATATGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAATGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAAGTCACTTAAAGTGA 1455 0.4034 QSDEHVYKSFLNISNMYRKEHKDIGEIYSEVATLFKDHRDLLEEFTRFLPDSFAAPSTQHAPDARNSLQRFSERSSMAPMMRQMQVYRRKRLPSHDRERDLSVEHPEMDDDNTMMNMHKKRRKRESKDMRINRDQDEREPDNNNSRDLNLQRFHEKKKSIKKAEGFGLASDFSSKEDKDTLKNMYSQAFSFFEKVKEKLNSADDYQAFLKCLHNFFVSEIIKRNELQNLVTDLLGKHLDLMVEFNDFLECLENIDGFLAGVMSKKSLRSSKLEDKDKDKEQKREMDGAKEKERYREKEYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVSSGSEDYSSEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINMETLNRIEDYFTVQNLRCIERLYGDHGLDVIDILRKNPTRALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKSHLK 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi686g00002 484 PANTHER SIN3B-RELATED 1 484 IPR039774 GO:0003714
Gabi686g00002 484 SMART hdac_interact2seq4b 311 411 IPR013194 -
Gabi686g00002 484 MobiDBLite consensus disorder prediction 59 79 - -
Gabi686g00002 484 MobiDBLite consensus disorder prediction 53 153 - -
Gabi686g00002 484 FunFam Paired amphipathic helix SIN3-like protein 1 52 - -
Gabi686g00002 484 Pfam Sin3 family co-repressor 313 405 IPR013194 -
Gabi686g00002 484 SUPERFAMILY PAH2 domain 182 249 IPR036600 GO:0006355
Gabi686g00002 484 ProSiteProfiles PAH domain profile. 1 52 IPR003822 GO:0006355
Gabi686g00002 484 Gene3D Paired amphipathic helix 1 50 IPR036600 GO:0006355
Gabi686g00002 484 ProSiteProfiles PAH domain profile. 181 251 IPR003822 GO:0006355
Gabi686g00002 484 Pfam Paired amphipathic helix repeat 203 248 IPR003822 GO:0006355
Gabi686g00002 484 Pfam Paired amphipathic helix repeat 5 49 IPR003822 GO:0006355
Gabi686g00002 484 SUPERFAMILY PAH2 domain 2 51 IPR036600 GO:0006355
Gabi686g00002 484 MobiDBLite consensus disorder prediction 89 118 - -
Gabi686g00002 484 Coils Coil 384 414 - -
Gabi686g00002 484 FunFam Paired amphipathic helix protein SIN3 178 253 - -
Gabi686g00002 484 MobiDBLite consensus disorder prediction 269 294 - -
Gabi686g00002 484 MobiDBLite consensus disorder prediction 127 153 - -
Gabi686g00002 484 Gene3D Paired amphipathic helix 179 252 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi686g00002 Gabi-Chr686 4584 6965 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi686g00002 Sin3_corepress 5.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi686g00002 K11644 - gmx:100807181 756.133