Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi685g00006 ATGGGGAGGGGAAGAGTGCAATTGAAGAGGATCGAGAACAAGATCAATAGACAAGTCACCTTCTCAAAGAGAAGGTCTGGTTTGCTTAAGAAAGCACACGAGATCTCTGTGCTTTGTGATGCTGAAGTTGCTCTCATAGTCTTCTCCACCAAAGGCAAGCTTTTCGAGTACTCTAGCGATCCCTGCATGGAAAGAATTCTTGAACGGTATGAGAGATATTCGTATGCGGAGAGGCAGCTTGTTGCAAATGATCAGCAACCAAATGAAAATTGGACTCTAGAACACGCAAAGCTCAAAGCAAGGTTGGAAGTCCTACAGAGAAATCAAAGGAATTTTATGGGAGAAGAACTGGATGGCCTAAGTATAAAAGAGCTTCAAAATTTGGAACATCAGCTTGATTCTGCTCTCAAACACATTAGATCACGAAAGAACCAACTCATGTATGAATCTATTTCAGAGCTTCATAAAAAGGATAAGGCCCTCCAAGAACAAAACACCTTGCTTGCTAAGAAGATAAAGGAGAAAGAGAAGGCACTGACCCAACAGGCCCAACTGGAGCAGCAAACTGATGATATGGATCTAGCCTCTTCTGCCGTCGTACCTCAATCATTGCAAACCTTGAATATTGGTGGTTCCTTGCAAGGGAGAGGTGATGGGGAAGATAATGAAGGAACCCCAACGCGAACCCAAGCTACTGCCCTTCTTCCACCTTGGATGCTTCGTCCCATAAATGAATAG 738 0.4377 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAERQLVANDQQPNENWTLEHAKLKARLEVLQRNQRNFMGEELDGLSIKELQNLEHQLDSALKHIRSRKNQLMYESISELHKKDKALQEQNTLLAKKIKEKEKALTQQAQLEQQTDDMDLASSAVVPQSLQTLNIGGSLQGRGDGEDNEGTPTRTQATALLPPWMLRPINE 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi685g00006 245 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Gabi685g00006 245 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Gabi685g00006 245 Coils Coil 125 145 - -
Gabi685g00006 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi685g00006 245 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Gabi685g00006 245 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Gabi685g00006 245 MobiDBLite consensus disorder prediction 206 245 - -
Gabi685g00006 245 Coils Coil 88 108 - -
Gabi685g00006 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Gabi685g00006 245 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi685g00006 245 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi685g00006 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi685g00006 245 Coils Coil 168 188 - -
Gabi685g00006 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi685g00006 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi685g00006 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi685g00006 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi685g00006 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi685g00006 Gabi-Chr685 153536 166468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi685g00006 1 214 MADS-box Gene Family AT1G26310 61.674 2.39e-93 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi685g00006 K-box 5.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi685g00006 K09264 - gmx:100784742 396.356