Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi684g00010 ATGGTTTCCCGGGAAAACACCAATTGGCTTTTCGATTACGGCTTGATTGATGATATTCCCGTTCCTGATGCCACCTTCGCTGTCCCTTCCTCCGGGTTCACCTGGTCCCCTCAGGCCTTGAATGCTTCTTCCAATGTCGGAATACCATCTGCTCATAGTGTTGAAATTGATGGCTCATTGGGGGATTCTGACAGTCTCAAAGAGGCTGGTTCAAAGAAGAGGGGTAGATCTGAGTCATGTGCTGCTACTGGCTCCAAGGCATGTCGGGAGAAGTTGCGGAGGGATAGGCTTAATGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTACCAAAACAGACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTTACACAGTTACGGGGTGAAGCCCAGAAGTTGAAAGACAATAATATGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAAAATGAGCTTCGTGATGAGAAACAGAGGCTCAAGGCAGAGAAAGAGAAGTTGGAGCAGCAGCTGAAATCAATGAATACACAACCTAGTTTCTTGCCTCCCCCTGCTGCAATCCCTGCTGCATTTGCTGCACAAGGCCAAGCCCATGGCAACAAATTGGTACCTTTCATTAGTTATCCAGGAGTAGCAATGTGGCAGTTTATGCCACCTGCTGCAGTAGATACCTCTCAGGATCACGTACTCCGTCCTCCAGTTGCCTAA 729 0.4774 MVSRENTNWLFDYGLIDDIPVPDATFAVPSSGFTWSPQALNASSNVGIPSAHSVEIDGSLGDSDSLKEAGSKKRGRSESCAATGSKACREKLRRDRLNDKFVELGSILEPGRPTKTDKAAILIDAVRMVTQLRGEAQKLKDNNMGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKSMNTQPSFLPPPAAIPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi684g00010 242 SMART finulus 87 138 IPR011598 GO:0046983
Gabi684g00010 242 Gene3D - 85 159 IPR036638 GO:0046983
Gabi684g00010 242 MobiDBLite consensus disorder prediction 57 78 - -
Gabi684g00010 242 FunFam Transcription factor bHLH34 72 130 - -
Gabi684g00010 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 132 IPR011598 GO:0046983
Gabi684g00010 242 Pfam Helix-loop-helix DNA-binding domain 85 132 IPR011598 GO:0046983
Gabi684g00010 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 85 151 IPR036638 GO:0046983
Gabi684g00010 242 CDD bHLH_AtILR3_like 86 161 - -
Gabi684g00010 242 Coils Coil 129 184 - -
Gabi684g00010 242 PANTHER BHLH TRANSCRIPTION FACTOR 3 242 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi684g00010 Gabi-Chr684 144262 150762 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi684g00010 1 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.082 7.24e-115 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi684g00010 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi684g00010 - - gmx:100788858 398.667