Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi684g00009 ATGGTTTCCCGGGAAAACACCAATTGGCTTTTCGATTACGGCTTGATTGATGATATTCCCGTTCCTGATGCCACCTTCGCTGTCCCTTCCTCCGGGTTCACCTGGTCCCCTCAGGCCTTGAATGCTTCTTCCAATGTCGGTGTTGAAATTGATGGCTCATTGGGGGATTCTGACAGTCTCAAAGAGGCTGGTTCAAAGAAGAGGGGTAGATCTGAGTCATGTGCTGCTACTGGCTCCAAGGCATGTCGGGAGAAGTTGCGGAGGGATAGGCTTAATGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTACCAAAACAGACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTTACACAGTTACGGGGTGAAGCCCAGAAGTTGAAAGACAATAATATGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAAAATGAGCTTCGTGATGAGAAACAGAGGCTCAAGGCAGAGAAAGAGAAGTTGGAGCAGCAGCTGAAATCAATGAATACACAACCTAGTTTCTTGCCTCCCCCTGCTGCAATCCCTGCTGCATTTGCTGCACAAGGCCAAGCCCATGGCAACAAATTGGTACCTTTCATTAGTTATCCAGGAGTAGCAATGTGGCAGTTTATGCCACCTGCTGCAGTAGATACCTCTCAGGATCACGTACTCCGTCCTCCAGTTGCCTAA 711 0.4796 MVSRENTNWLFDYGLIDDIPVPDATFAVPSSGFTWSPQALNASSNVGVEIDGSLGDSDSLKEAGSKKRGRSESCAATGSKACREKLRRDRLNDKFVELGSILEPGRPTKTDKAAILIDAVRMVTQLRGEAQKLKDNNMGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKSMNTQPSFLPPPAAIPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi684g00009 236 Gene3D - 79 153 IPR036638 GO:0046983
Gabi684g00009 236 PANTHER BHLH TRANSCRIPTION FACTOR 3 236 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Gabi684g00009 236 SMART finulus 81 132 IPR011598 GO:0046983
Gabi684g00009 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 145 IPR036638 GO:0046983
Gabi684g00009 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Gabi684g00009 236 FunFam Transcription factor bHLH34 66 124 - -
Gabi684g00009 236 MobiDBLite consensus disorder prediction 51 72 - -
Gabi684g00009 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Gabi684g00009 236 CDD bHLH_AtILR3_like 80 155 - -
Gabi684g00009 236 Coils Coil 123 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi684g00009 Gabi-Chr684 144262 150764 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi684g00009 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.548 2.72e-115 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi684g00009 HLH 3.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi684g00009 - - gmx:100788858 405.216