Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi684g00005 ATGCCCATATCGCGGATAAAACCCCTTAAGGAAGCTAACTTAAGGCCCAAGGCAATCCCACCGCGCCTTTATTCCAATAAAAGGCAGACAGCTCCAGCTTGCCGCGACTCTACAACTGGAGATAAGGCTACTCAGCATCACACCAATCCTAACATTAATAGTGTACCCATTATACACCATCCTCGAAAAGTTAGCTTTGCAATTGCAATGGCAATGGCTTGCAAGAGCATCCAATGCAGTTCTTCATCTCTGATGACATGGAAATATGATGTGTTTGTGAGCTTCAGAGGTGAGGATACACGTAAAACTTTCACTGATCATCTCTTTGCTGCTCTCCATAGAAAAGGAATTCTTGCCTTCAGGGATGATACAAAGCTCAAGAAAGGTGAATCCATAGGACCTGAGCTTCAACAAGCAATTGAAGGGTCTCGGGTTTTGGTTGTGGTCTTCTCAAAGAACTATGCTTTCTCAACATGGTGCTTGCGAGAACTTGCAAATATTCTCGATTGCGTTCAAGTATCAGGAAGACGGGTTCTGCCTATTTTCTATGATGTTGATCCATCTGAGGTACGAAAACAAAGTGAGAGTTATGAGAAAGCCTTTGCTGAATATGAAGAAAAATTCAAAGAAGATTTAGACAAGATGGAGGAAGTGAAAAGATGGAGAGGAGTTCTGACACAAGTGGCCAATCTCTCTGGTTGGGATGTAAGAGATACGCCACAAAATGCAGAGATTGAAAAAATTGTTAAATACATAGGAAGTATATTGAATCACAAAACTTCAAGTCTTCCAAATGATATTGTTGGGTTGCAATCTCCGGCAGAAAAATTAGAAAAACTTTTACTTTTGGGGCCGGTTGATGATGTTCGAGTTGTAGGAATTTGTGGTATGGGGGGGATAGGAAAGACAACTCTTGCTTCAGTTTTGTGGGATAGAATCTCTCATCATTATGATGCTCACTGTTTTATTCATGATTTAAGCAATTCTGGTCCAATTGAGGCACAAAAGCAACTTCTAAGCCAAACTCTACATGAAGAAAACCTTCATATGCCCAATCCTTTAAATGCAGCTAGTTTAATAAGAAGTAGGCTTCGTCATTTAAGGTCCCTGATTGTTCTTGATAATGTTGATAAAGTTGAACATATAGAGAAATTAGCTGTGGATCCTCAATGGTTAGGTGCGGGGAGTGGAATCATTATAATTTCTAGAGATGAACATATCTTAAGAGAGTATGGAGTGCACGCTATTCACAAGGTTCAACTCTTGAATTGTGATGATGCTCTTCAATTATTTTGTAAAAAAGCTTTCAAATGTGATGATATAAGGAGAGGTTATGAAGCATTGACAAATGATGTATTAGAATATGCTAATGGCCTTCCACTAGCAATTAAAGTATTGGGCTCATTTTTGTCTGGACGAAGTGTCTCTGAGTGGAGAAGTGCATTGGCAAGATTGAAAGAAATTCCAAACAGAGATATATTAGATGTGCTACGAATCAGTTACGAGGGACTCCAACAAATGGAAAAAGAAATATTTTTGGATATTGCTTGTTTCTTCAATGGGAAAAAGCCAGGATATGTTATGGAAGTTCTACGTTGTTGTGGATTTCATCCAGAAATTGGAATGAAAGTTCTCATTGATAAATCTCTGCTAACTATTTCTTACCATTACTCAGTATTTTATCATATCAAAATGCACGATTTGTTGCAAGAGCTCGGGAGAAAAATAGTTCAAGAAAATTCACCCAAAGAGCCAAGAAATTGGAGCAGGCTTTGGCTCTACAAAGATTTTCGCAAGGTTATGTTGGAGGAGAATATGGAAAACAAGGTTGAAGCCATAGTTTTGAACGGCTCAGAAGAATCTGAAGAATTGATGGCCGAAGGATTGTCAAAAATGAAGCACCTTAGATTGCTCATACTCAATGGTGTGAAATTTTCGGGAAGACTCAATTGTTTTTCCAATAAATTTCGATATGTTGAGTGGGATGAATATCCCTTCATGTACTTGCCATCAAGTTTTGAACCGGAAGAGCCTGTTCATTTGATCTTGAAGCAAAGCAACATAAAAAGACTATGGGAGGGCAAGAAGTACATGCCCAATTTGATGAGTCTTGACCTTAGCCACTCCAAAAATCTTATGAAGATGCCAGATTTTGGAGAGGTCCCAAATCTTGAGGAGCTTATTCTTGAAGGATGTACAAAACTTGTGCAGATCGATCCATCCGTTGGTCTTCTAAGAAAGCTTGCTTACTTGAATTTGAAAAACTGCAAAAATCTAGTAGGTATACCCAACAACATAGTGGATGTCACCTCTCTCCTATATCTAAATCTCTCTGGCTGTTCAAAAATGTTCAGTAACCATCTTCCATGGCATGAGGAGCATTTGAAGAAGCTTGGTATAAGTGAAACAGCCTCCCACTTGCAGTCAACATCCTCTACCTTTGAAAGGCTTTTGTTGCCTTTCCACTCTTCTAATTCTAGAACAGATAAAGATTCAGCTACTTGGTTGTTGCCTTCCTTGCCTTGCTTCTCTTGTTTGACAATTCTTGATCTGAGTTTCTGCTATCTGCAACAAATTCCTGAAGCTATTGGAACTTTGCTTTGCTTAACATTTCTTAATTTGGAGGGAAACAATTTTGTGACAATGACGTGTAGCCTGAAGGAGCTTTCAAAACTTGTGTATTTGAACTTGTCACATTGCAAGCACTTGAAATCTTTGCCTCAGCTCCCTTCACGTCCTTACATGCCAGCAGGAGATGAAGTTCCTGAGCATCAGAGAACACCACTTACATTATACATCTTCAACTGCCCAAATTTGAGTGAGAGGGAACGCTGCAACAGCATGATATTTTCATGGATGGTACAGGTCGTTCAGGTGAGCCTAGAATCCTCTGCCCCTTTGGAGGGTATTGATATTGTTTTTCCGGGAAGTGAAATACCAAGGTGGTTCAACAATCAGAATGTGGGCAATTCAATAAGTGTTGACCTATCTCCCATTATGCATGACGATGATTGGATAGGCATTGCTTGCTGTGCAGTATTTGTGGCATCTTGTGATCCAATTACTTTGAGATGCGGACACGGTGTCACTTTTCAGATTGGTTTTTATTATAAATCGGATTGGTCATTTTTCGACAGTCATGTACACATGCAGGGTGAACTGTTAACTGTTGAATCAGATCATATCTGGCTATTCTATTTCCCATGGGAAATATCAAGTGGTATTATGAGTCTTGCAGCTAGCCAAAAAAGTGACAATCATGATTTTGAAGATATTAAGATGATAGTTTCGTTCAGGGACGGTGCAGGTGTGCACTTGGAAGTGAAAAATTGTGGGTATCATTGGGTATTTAAGAAGGACTTTGAACAATTCAAGAAGATGCATAGAGGTGATCCAATGTCTCAAAAGCGCGAGATTTTAGAAATTGATGGAGAGCCACAGCCATAA 3447 0.394 MPISRIKPLKEANLRPKAIPPRLYSNKRQTAPACRDSTTGDKATQHHTNPNINSVPIIHHPRKVSFAIAMAMACKSIQCSSSSLMTWKYDVFVSFRGEDTRKTFTDHLFAALHRKGILAFRDDTKLKKGESIGPELQQAIEGSRVLVVVFSKNYAFSTWCLRELANILDCVQVSGRRVLPIFYDVDPSEVRKQSESYEKAFAEYEEKFKEDLDKMEEVKRWRGVLTQVANLSGWDVRDTPQNAEIEKIVKYIGSILNHKTSSLPNDIVGLQSPAEKLEKLLLLGPVDDVRVVGICGMGGIGKTTLASVLWDRISHHYDAHCFIHDLSNSGPIEAQKQLLSQTLHEENLHMPNPLNAASLIRSRLRHLRSLIVLDNVDKVEHIEKLAVDPQWLGAGSGIIIISRDEHILREYGVHAIHKVQLLNCDDALQLFCKKAFKCDDIRRGYEALTNDVLEYANGLPLAIKVLGSFLSGRSVSEWRSALARLKEIPNRDILDVLRISYEGLQQMEKEIFLDIACFFNGKKPGYVMEVLRCCGFHPEIGMKVLIDKSLLTISYHYSVFYHIKMHDLLQELGRKIVQENSPKEPRNWSRLWLYKDFRKVMLEENMENKVEAIVLNGSEESEELMAEGLSKMKHLRLLILNGVKFSGRLNCFSNKFRYVEWDEYPFMYLPSSFEPEEPVHLILKQSNIKRLWEGKKYMPNLMSLDLSHSKNLMKMPDFGEVPNLEELILEGCTKLVQIDPSVGLLRKLAYLNLKNCKNLVGIPNNIVDVTSLLYLNLSGCSKMFSNHLPWHEEHLKKLGISETASHLQSTSSTFERLLLPFHSSNSRTDKDSATWLLPSLPCFSCLTILDLSFCYLQQIPEAIGTLLCLTFLNLEGNNFVTMTCSLKELSKLVYLNLSHCKHLKSLPQLPSRPYMPAGDEVPEHQRTPLTLYIFNCPNLSERERCNSMIFSWMVQVVQVSLESSAPLEGIDIVFPGSEIPRWFNNQNVGNSISVDLSPIMHDDDWIGIACCAVFVASCDPITLRCGHGVTFQIGFYYKSDWSFFDSHVHMQGELLTVESDHIWLFYFPWEISSGIMSLAASQKSDNHDFEDIKMIVSFRDGAGVHLEVKNCGYHWVFKKDFEQFKKMHRGDPMSQKREILEIDGEPQP 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi684g00005 1148 Gene3D - 422 505 IPR042197 -
Gabi684g00005 1148 MobiDBLite consensus disorder prediction 30 54 - -
Gabi684g00005 1148 Gene3D - 257 417 IPR027417 -
Gabi684g00005 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 515 IPR027417 -
Gabi684g00005 1148 ProSiteProfiles TIR domain profile. 87 256 IPR000157 GO:0007165
Gabi684g00005 1148 Pfam NB-ARC domain 277 487 IPR002182 GO:0043531
Gabi684g00005 1148 Gene3D - 81 256 IPR035897 -
Gabi684g00005 1148 Pfam C-JID domain 974 1121 IPR045344 -
Gabi684g00005 1148 SUPERFAMILY L domain-like 624 937 - -
Gabi684g00005 1148 SUPERFAMILY "Winged helix" DNA-binding domain 492 600 IPR036390 -
Gabi684g00005 1148 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 89 783 IPR044974 GO:0006952
Gabi684g00005 1148 SMART till_3 88 231 IPR000157 GO:0007165
Gabi684g00005 1148 FunFam Disease resistance protein (TIR-NBS-LRR class) 85 258 - -
Gabi684g00005 1148 Gene3D Ribonuclease Inhibitor 823 941 IPR032675 -
Gabi684g00005 1148 PRINTS Disease resistance protein signature 363 377 - -
Gabi684g00005 1148 PRINTS Disease resistance protein signature 696 712 - -
Gabi684g00005 1148 PRINTS Disease resistance protein signature 291 306 - -
Gabi684g00005 1148 PRINTS Disease resistance protein signature 456 470 - -
Gabi684g00005 1148 MobiDBLite consensus disorder prediction 25 54 - -
Gabi684g00005 1148 SUPERFAMILY Toll/Interleukin receptor TIR domain 79 234 IPR035897 -
Gabi684g00005 1148 Pfam TIR domain 88 260 IPR000157 GO:0007165
Gabi684g00005 1148 Gene3D Ribonuclease Inhibitor 601 818 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi684g00005 Gabi-Chr684 48492 57079 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi684g00005 89 928 WRKY Transcription Factor Family AT4G12020 29.873 1.62e-86 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi684g00005 - - gmx:100820213 1177.16