Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi684g00001 ATGGCTTCATCATCTTCCTCAACAACAACAAGCACTTCTTCATCTCGGATGATATGGAAATATGACGTGTTTGTCAGCTTCAGAGGTGAAGACACACGTAATAACTTCACCGATCATCTTTTCGGTGCTCTCCAAAGAAAAAATATTGTTGCCTTCAGAGATGATACAAAGCTCAAGAAAGGCGAATCCATAGCACCTGAGCTCCTTCAAGCAATTGAAGGGTCTCAAATTTTTATTGTTGTCTTCTCAAAGAACTATGCTTCCTCAACATGGTGCTTGCGAGAACTCGCAAAGATCCTCGATTGCGTTCAAGTATCAGGAAAACGACGTGTTCTGCCTGTTTTCTATGATGTTGATCCGTCTGAAGTGAGAAAACAAAGTGGGAATTATGAGAAAGCCTTTGTTGAACATGAAGAAAGATTCAAAGAAGATTCAGATATGATGGTGGAAGTGAAAAGATGGAGAAGAGATCTGACAGAAATTGCCAATCTTTCTGGTTGGGATGTACGGGATAAGCCTCAATATGCAGAGATTGAAAAAATTGTTAAAGTGATAATTAGTATATTATTGGATCAGGAAATTTCAAGTCTTCCAAATGATCTAGTTGGGATAGAATCTCCAGTAGCAGAATTAGGAAAGCTTTTACTTTGGAGCTCAGTTGATGCTGTTCAGGTTATAGGAATTTATGGTATGGGTGGAATAGGTAAGACAACGCTTGCTACTCTTTTATATGAAAGAATCTCTCATCGATTTGATGCTTCCTTTTTCATTGCTGATGTAAACAAGTCTGATCCAATTGATGTACAAAAACAACTTCTACGTCAAGCTCTAAATGAAGAAAACCTTCATATATCCGATCCTTTTACAGCAGCTAATTTGATACGACGTAGGCTTGGTCATCTAAGGGTCCTTATAGTTCTTGATAATGTTGATCAAGTTGAACAATTAGAGAAATTAGCTTTGAATCGTGAATGGTTGGGTGCGGGGAGTAGAATCATCATTACTTCTAGAGACTTGCATATCTTTAGAGAGTATGGAGTGGACAATGTTTACACAGTCGAACTCTTGAATGGTGATAATGCTCTTCAATTATTTTGTAGAAAAGCTTTCAAATATGATGATATTAGGAGAGGTTATGAAGCTTTGACATATGACATACTAAGTTATGCTAATGGCCTTCCACTGGCAATTAAAGTATTGGGCTCATTTTTATTTGGTCGAGATGTCTCTGAGTGGATAAGTGCATTGGCTAGATTGAGAGAAAATCCAAGCAAAGATATCATGGATGTGCTCCGAATCAGTTATGATGGATTGGAAGAAATGGAAAAAGAAATATTTCTAGATATTGCGTGTTTCTTCAATGGGCAGCCGTTGGATTTAGTTAAGAGATGTCTAGACTGTTGTGGATTTCAACCTGATATTGGAATACGAGTTCTCATTGATAAATCACTCCTAACCACTTCAGATTATTATGCTAGATTTCCACATATTAAAATGCATGATTTGTTGCAAGAGCTAGGAAGAAAAATAGTTCGAGAAAATTCACCCAAGGAACCAAGAAAGTGGAGCCGACTTTGGCTATATAAAGATTTCTGCAAGGTTGCATTGGATAAGAAAATGGAAAATAAGGTTGAAGCTGTAGCTTTGAATGGTAAAGAAGAAACTGGAAGATTGACGGTTGAAGCATTGTCAAAAATGAGTCACCTTAGAATGCTTATACTCAGTAATGTGAAATTTTCAGGCAGCCTCAATTGTCTTTGTAATAAATTACGATATGTTGGGTGGAGAGAATATCCGTTCATGTATTTGCCATCAAGTTTTCAGCCGGATGAGCTTGTTGCATTGAACTTGAAGCATAGCAGCTTGAAACAATTATGGCAAGGCAAGAAGTATATGCCTAATTTGATAAGGCTGGATCTTAGCCACTCCAAAAATCTTAGCAAGATGCCAGATGTTGGAGAGGTCCCAAATCTTCAGTTACTGGATCTTGAAGGATGTATAAAACTTGTGGAGATAGATCCATCCATTGGTCATCTAAGAAAGCTTACTGTCTTGAATTTGAAAAACTGCAAAAATCTAGTAAGCATACCCAACAGCATAGTGGGTCTCACTTCTCTTGAATATCTAAATCTCTCCGGCTGTTCAAAAGTGTTAAATAACCAGCTAACAAGTCATGGGGAGCATTTGAAGAAGCTTGATATAAGTGAAACTGTTATGCACTCCCAATCAACATCCTCCATCTTCAAAAGGTTTTTGTTGCCTTACCCTTTATTGTATTCTAGAATACATAAAGATTCAGCTACTTGTTTGTTGCCCTCCTTGCCTAGCTTCTCTTGTTTGAGATATCTTGATCTAAGTTTCTGCGATCTAGTACAAATCCCTGATGCTATTGGAAGTATACATTGTTTAGAAAGACTATATTTAGAGGGAAACAATTTTGTTAGATTGACTTGTAGCCTGAAGGAGCTTTCCAAACTTGTGTTTTTAAACTTGTCCCATTGCAAGCACTTGACATCTTTGCCGGAGCTCCCTCTGGGTACCCCTTCAGGTACATACATTCCTGAGCATTTGAGAATACGAAAATTATACGTTTTCAACTGCCCAAATTTGGGTGAGAGAGAACGCTGCAGTAGTATGATTTTTCCATGGATAACAGAAGTCATTCAGGCGAGGCAAGAATCATCTTCTGGCATTTGTTGGATTGATATTGTTGTTCCTGGAAGTGAAATACCAAGGTGGTTCAGCAATCAGACTGTGGGTTGTTCATTAAGGGTAGACCTGTCACCCATTATGCATGACAATAATTGGATTGGCATTGCTTGCTGTGTAGTGTTTGTGGCACTTACTGATCCAATTACTTTGAGAAATGAACAGATACCCTATTTACAGATACGTTTTACTTGTAAAGCAGATCAGATCATAAGTGGCTATTCCCTGTGCAGACTCGATGAAGGTCTGGTAACAGTAGAATCAGATCATATGTGGCTATACTATTTCCCTAGGGAACAATCAGTTGATTTTATGAGTCGGGCAGCTCGCAAAAAGGGCGAGACGCATGATCTTGAAGATATCAAGATGGAAGTTTTGTTCGATCATCTTGGATCATATGGAGAAAGAAGTGGCCTAGGTGCGCAGTTGGAGGTGAAGAATTGTGGGTATCATTGGGTATTTAAGAAGGATCTTGAACTGTTTCAGAAGATGCATACTGGTAATTTGCCAGCACAAAAGGGTGGAATTTTAGGAATTGATGATTAG 3255 0.3831 MASSSSSTTTSTSSSRMIWKYDVFVSFRGEDTRNNFTDHLFGALQRKNIVAFRDDTKLKKGESIAPELLQAIEGSQIFIVVFSKNYASSTWCLRELAKILDCVQVSGKRRVLPVFYDVDPSEVRKQSGNYEKAFVEHEERFKEDSDMMVEVKRWRRDLTEIANLSGWDVRDKPQYAEIEKIVKVIISILLDQEISSLPNDLVGIESPVAELGKLLLWSSVDAVQVIGIYGMGGIGKTTLATLLYERISHRFDASFFIADVNKSDPIDVQKQLLRQALNEENLHISDPFTAANLIRRRLGHLRVLIVLDNVDQVEQLEKLALNREWLGAGSRIIITSRDLHIFREYGVDNVYTVELLNGDNALQLFCRKAFKYDDIRRGYEALTYDILSYANGLPLAIKVLGSFLFGRDVSEWISALARLRENPSKDIMDVLRISYDGLEEMEKEIFLDIACFFNGQPLDLVKRCLDCCGFQPDIGIRVLIDKSLLTTSDYYARFPHIKMHDLLQELGRKIVRENSPKEPRKWSRLWLYKDFCKVALDKKMENKVEAVALNGKEETGRLTVEALSKMSHLRMLILSNVKFSGSLNCLCNKLRYVGWREYPFMYLPSSFQPDELVALNLKHSSLKQLWQGKKYMPNLIRLDLSHSKNLSKMPDVGEVPNLQLLDLEGCIKLVEIDPSIGHLRKLTVLNLKNCKNLVSIPNSIVGLTSLEYLNLSGCSKVLNNQLTSHGEHLKKLDISETVMHSQSTSSIFKRFLLPYPLLYSRIHKDSATCLLPSLPSFSCLRYLDLSFCDLVQIPDAIGSIHCLERLYLEGNNFVRLTCSLKELSKLVFLNLSHCKHLTSLPELPLGTPSGTYIPEHLRIRKLYVFNCPNLGERERCSSMIFPWITEVIQARQESSSGICWIDIVVPGSEIPRWFSNQTVGCSLRVDLSPIMHDNNWIGIACCVVFVALTDPITLRNEQIPYLQIRFTCKADQIISGYSLCRLDEGLVTVESDHMWLYYFPREQSVDFMSRAARKKGETHDLEDIKMEVLFDHLGSYGERSGLGAQLEVKNCGYHWVFKKDLELFQKMHTGNLPAQKGGILGIDD 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi684g00001 1084 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 167 IPR035897 -
Gabi684g00001 1084 PRINTS Disease resistance protein signature 297 311 - -
Gabi684g00001 1084 PRINTS Disease resistance protein signature 225 240 - -
Gabi684g00001 1084 PRINTS Disease resistance protein signature 390 404 - -
Gabi684g00001 1084 PRINTS Disease resistance protein signature 677 693 - -
Gabi684g00001 1084 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 719 IPR044974 GO:0006952
Gabi684g00001 1084 Pfam C-JID domain 905 1062 IPR045344 -
Gabi684g00001 1084 SUPERFAMILY L domain-like 498 875 - -
Gabi684g00001 1084 Pfam TIR domain 20 185 IPR000157 GO:0007165
Gabi684g00001 1084 ProSiteProfiles TIR domain profile. 19 189 IPR000157 GO:0007165
Gabi684g00001 1084 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 191 - -
Gabi684g00001 1084 Gene3D Ribonuclease Inhibitor 761 872 IPR032675 -
Gabi684g00001 1084 Pfam Leucine rich repeat 656 714 IPR001611 GO:0005515
Gabi684g00001 1084 Gene3D - 355 439 IPR042197 -
Gabi684g00001 1084 SMART till_3 20 164 IPR000157 GO:0007165
Gabi684g00001 1084 Gene3D Ribonuclease Inhibitor 549 742 IPR032675 -
Gabi684g00001 1084 Gene3D - 13 186 IPR035897 -
Gabi684g00001 1084 Pfam NB-ARC domain 221 427 IPR002182 GO:0043531
Gabi684g00001 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 449 IPR027417 -
Gabi684g00001 1084 Gene3D - 187 349 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi684g00001 Gabi-Chr684 5779 9980 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi684g00001 21 806 WRKY Transcription Factor Family AT4G12020 31.408 3.10e-89 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi684g00001 - - gmx:100820213 1179.08