Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi67g00003 ATGAGTCGAGAACAGCAGAAGCGAGGGAAGCAAGAAAAAGGTTCTGATGGTGCTGAAAAGGTTATTGTTGCGGTCAAGGCATCAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCTCTGACTCATGTTGTTCAACCTGGGGATTGCATTACACTGCTAGTGGTTGTACCGTCACAAAGTTCAGGCCGCAGATTATGGGGATTTCCGAGGTTTTCTGGTGACTGTGCCAGTGGTCACAAGAAGTCTACTCCAGGAACAAGTTCAGAACAAAAGAGTGATATCACTGATTCTTGCTCTCAAATGATCCTTCAGCTCCATGATGTCTATGATCCCAATAAGATAAATGTCAAGATTAAAATTGTTTCTGGATCAACTTCTGGAGCAGTGGCTGCAGAAGCCAAGAAGGCCCAAGCCAATTGGGTCGTATTAGACAAACAGCTCAAACACGAGGAAAAACAATGCATGGAAGAGCTGCAGTGCAACATTGTGGTTATGAAGCGTTCCCAACCCAAAGTACTCCGCTTGAATTTGATTGGATCACAAAAGAAGGATCTAGGAGAAGTATGTCCATTGCCTTCTGAGCAAGATAAGATGTCTGCAAAACAAACCAGGAAGAATGATTCTTTAAATACCATAAAAGGACCAGTTGTCACTCCAACTAGCAGCCCCGAGTTAGAGACACCGTTTACTGCAACTGAAGCTGGTACTTCATCAGTTTCCAGCTCTGATCCAGGAACTTCACCATTTTTTATCCCTGAGATGAATGCTGAGTCAAAGAAAGAGGAAACTATCAAAGAAAATCAAGAACTTGATGGTACTATTTCAGACACAGACAGTGAAAGTTTGCCCACATCTTCAGCAAGCTTGAGATTCCAGCCGTGGATCACAAATTTACTTTTACATCAACAATCATCTCAACTTAGAGAAGAAAGATCAGAAAGATCTCATAATGGGCTTCAATTGTCTACAACTAGAGCTTTGATGGAAAAGTTCTCAAGGCTTGATAGAGAAGCTGAAATTGAGATTTCAACCTGCAGGACAGACTTGGATTTCAATGGAAAGGTAAGAGAAGCAATAGCATTATCTAGAAATGCTCCACCTGGTCCACCTCCGTTATGTTCAATATGTCAACACAAGGCTCCTATTTTTGGAAAACCTCCAAGATGGTTCAGCTATGCTGAGTTGGAGCTTGCAACTGGTGGATTTTCACAAGCCAATTTCTTGGCCGAAGGAGGATTTGGATCTGTTCACAGAGGGGTTCTACCAGATGAACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAGGGTGATCTTGAGTTTTGCTCAGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGTTGATTGGATTCTGTATTGAGGATAAGAGAAGGCTACTGGTTTATGAGTACATATGTAATGGATCATTGGATTCTCATTTATATGGGAGACAACGGGAACCGTTAGAATGGTCTGCACGGCAAAAAATTGCTGTTGGAGCTGCTCGAGGGTTGCGATATCTTCATGAAGAGTGCAGAGTTGGTTGCATTATCCACCGTGACATGCGGCCAAACAACATTCTTATCACTCATGATTTTGAACCACTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACACAGGAGTGGAAACTAGAGTAATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAGTAACTGAAAAGGCTGATGTTTATTCCTTTGGGGTGGTATTAGTGGAGCTTGTTACAGGGCGAAAAGCTGTTGATCTCAATAGGCCCAAGGGACAACAGTGTCTTACTGAGTGGGCACGGCCACTTTTGGAAGGTTATGCCATTGAGGAACTTATTGATCCAAGGTTGGGAAGTCACTATTCAGAACATGAGGTCTCTTGCATGCTACATGCTGCATCATTATGCATAAGGAGAGATCCTTATTCTAGACCACGCATGTCACAGGTTCTCCGAATACTGGAGGGTGACATGGTCATGGACACAAATTACATTTCAACTCCTGGTTATAATATGGGAAACCGGAGCGGTTGA 2088 0.432 MSREQQKRGKQEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRLWGFPRFSGDCASGHKKSTPGTSSEQKSDITDSCSQMILQLHDVYDPNKINVKIKIVSGSTSGAVAAEAKKAQANWVVLDKQLKHEEKQCMEELQCNIVVMKRSQPKVLRLNLIGSQKKDLGEVCPLPSEQDKMSAKQTRKNDSLNTIKGPVVTPTSSPELETPFTATEAGTSSVSSSDPGTSPFFIPEMNAESKKEETIKENQELDGTISDTDSESLPTSSASLRFQPWITNLLLHQQSSQLREERSERSHNGLQLSTTRALMEKFSRLDREAEIEISTCRTDLDFNGKVREAIALSRNAPPGPPPLCSICQHKAPIFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPDEQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQREPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQVTEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEGYAIEELIDPRLGSHYSEHEVSCMLHAASLCIRRDPYSRPRMSQVLRILEGDMVMDTNYISTPGYNMGNRSG 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi67g00003 695 FunFam Dual-specific kinase DSK1-like 12 166 - -
Gabi67g00003 695 MobiDBLite consensus disorder prediction 188 249 - -
Gabi67g00003 695 CDD STKc_IRAK 408 674 - -
Gabi67g00003 695 Gene3D Transferase(Phosphotransferase) domain 1 478 684 - -
Gabi67g00003 695 Gene3D Phosphorylase Kinase; domain 1 374 477 - -
Gabi67g00003 695 MobiDBLite consensus disorder prediction 204 248 - -
Gabi67g00003 695 Pfam Protein tyrosine and serine/threonine kinase 406 671 IPR001245 GO:0004672|GO:0006468
Gabi67g00003 695 ProSiteProfiles Protein kinase domain profile. 402 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi67g00003 695 PANTHER OS01G0750732 PROTEIN 154 679 - -
Gabi67g00003 695 SUPERFAMILY Protein kinase-like (PK-like) 386 679 IPR011009 -
Gabi67g00003 695 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 478 681 - -
Gabi67g00003 695 ProSitePatterns Tyrosine protein kinases specific active-site signature. 523 535 IPR008266 GO:0004672|GO:0006468
Gabi67g00003 695 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 374 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi67g00003 Gabi-Chr67 90923 95390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi67g00003 343 668 Trihelix Transcription Factor Family AT1G68690 50.453 3.81e-100 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Gabi67g00003 PK_Tyr_Ser-Thr 6.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi67g00003 - - gmx:100789216 1253.81