Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi679g00005 ATGCTTTGGTTCTTGTGTACCTTGTTGTTGCCGGCGATGACCGGGGACCGATGTCACCGGTTGAAGACCATGGCGGAAGAAGAAGGGGGTGTCGCCGTCGAGGAGAAGGCCTGCCCCAGGAATTTTCCGGCGGACCAACCGGAAACTCGTGACGACTCCGCTGCATTAGAGATTGATTACTTCTCGCAGGCTAGGAAAGCGCTAAGCGAGCGCTCGCCTTTCGATGTTGCCGAGGAAACGTCGACTTCTGGTACGGTTACTCTGCCGAGTGGGTTGGCGAGTTTGTTGAACCGTCACGGCGATAACCGGAGGCGCCACAAGAAGTCTCATTCTGGTGGTGGGGAGAAGAAGAAATCGTCGTCTAGAGCGAATGAGAAGTCGCGCGGTTACAACATTTGGGTTGAGACCGAGGAGTACTTTAGGGACTTGACGTTTTCTGATATCGACACCTTGCTTGAGGCTTCTTCGTCTTCTTGTTTAGCTTCTCGGGAGTGTTTTTCTATTCCGCGTTTGGGAAATGCTCCAAGGTTCAATGTAGTTAGTACTAGTAGTGAGGCCGTGGATGAAAAGACGCCTGTTCCAAGATTCAACGTAGTTAGTAGTGAGGATGTGAAGAAGACTGGTGAAGAAGTGAAAGAAGAGGATGGTTTGTTGGGAATTGAGTCAATTGACAATGTTGCCGCTGAGAAAGATTTGCCTCGGGATGACAAGAGTCACGATGATTCTGATTCTTCTATTGGTTTAGAGTGGTTTTTAGGTTGTAAGAATAAGGTTTCCTTAACTTCCGAGCGCCCTTCGAAGAAAAGGAAGCTTTTGGGTGGTGATGCTGGTCTGGAGAAAGTTTTAATGACCAGTCCTTGTGATGCGGACCAACCGTTTTGTCATTACTGTGGCAGGGGAGACACTGACAGTGATTCCAATCGGTTAATTGTCTGCACTTCTTGTAAAGTTGCAGTTCATCGGAAGTGCTATGGTATGCAAGATGATGTAGATGAGTCTTGGTTGTGTTCTTGGTGTAAGCGAAAGGGTGATTTTGATGACTCTGTGGATCCTTGTGTTCTTTGCCCAAACAAGGGTGGCGCATTAAAACCGGTTAATAGCAGTGTGGAAGGTTTTGGGTCTGTCCAGTTTGCGCACCTGTTCTGTTGCCTGTGGATGCCCGAGGTTTATATAGGCGATTTGAATAAGATGGAGCCTGTTATGAATGTGGAAGGAATCAAGGAAACACGGAGAAAATTAGTGTGTAATGTTTGCAAAGTGAAGTGTGGTGCATGTGTGCGGTGTAGCCATGGAACCTGCAGGACTTCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACATAGGATGGAGGTTTGGGCAAAGTATGATAATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAGCATTCAGATCTACAAGAGAAAAGAAGCATGCTGCCACTGGGAGGCTCTAATGCAGTTTCAGAAGCCAATGGCCTTCCAGTGACATTGCCAGTGAACAGTGAACACGATATTAAAATTGGTTGTGGGAATGGAGGGTTAGCGTCTGTCAATAGTGAAGACATATTGGACCATAATGATGAGCCACCAGATGAAGGATTTTCTGATTGTAGTTTAATTGCTCACGACATTTCGGGATGTGATGCTATGCCACAACATAATGTTGGAGTGGTTGGGAGGACCGGTGAGAATGTTGATGCGTCTGACTCCCTCAGTTTTGCACTTGTTTTGAAGAAGTCGGCGTTCACTCTTTGGCAGTTGATAGATCGAGGAAAAGTTGATGTAAAAGATATAGCACCGGACATTGGTATTACACCAGATACATTAACTGCAAATATCAATGAAGATTATATGGCCCCTGATGTGCGACACAAAATAGTTAATTGGCTAAAAGCCCATGTATATACTAGTGCATTTCAGAAAGGTCTAAAAGTCAAATTCAAACCAGCCAATGCATCCAAGGATGAAAGTGAAGCCACAGATGGTTCTGATACTTTACCAATATCAGATTCAGGTTTGCCGGATCCTGTTGCTGTTAAGTCGGTACCACCAAGGAGAAGAACGGTCAGTAACATTAGGATTTTGAAGGATAATAAAGTGATATGCTCATCTGAGGGAGTCACTAGCGAGAATGGGATGCAATTGGACAAGTTAAGAGTAGGTCATCCTGAGCGTGAAAATCCTGGAAGTTCCAAGGAAGCATCCTTTCCTGTTGCGACTGAAATGAGTTTAACCAAGCGTGAGGATATATCTCCCGAGGTTCAAGGCAATGCTGATAAAATGCAGAATTCTGGATGTGTTTCAGAAGAAAAGTCTACTGATTGTTTGCAGAATTCTTCTATGCTTTCTGATCAGTGCTGTCCTGTTCATTCTGCTTCAGAACCACCTGATTCTGGTTTCATAAAGGTGGAACCGATATCTAGTTACATTCACCCATACATCAACAAGAAATTGCTGCATATTCGTGATGGGGTGCTCTTGGAGGACATTATATGTTCACGTGAGGAGGGAAATTCTTCTTTGGTTGAATCATCAGGGGCTAATGGCTGCTCAAGTAGCCAAAATCAGCAATTAACTAGCATTGACATTTTCAAGCCTGATCAAGCAAATATGGAGCAGTTGTTTGGGGCTAGAAAATTGGAACTTGTGGAGTTTCCTCCAGAAGATGAAGTGGAGGGGGAACTTATATATTTTCAGTATAGATTACTGCAGAATGCAGTTGCAAGAAAGAGGCTTACTGATAACTTGGTCTACAGTGTTGCCAAGAGTTTGCCACAGGAGATTGATAAAGTACATCAGCAAAGATGGGATGCTGTGATTGTTAATCAATATCTACGTGATCTTAAGGAGGCCAAAAAACGTGGCAGAAAAGAAAGAAGGCACAGGGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCTGCTGCTGCAGCATCCTCTAGGGTTTCTTCTTTCAGAAAAGACACCTTAGATGAATCTATGCAACAGGAGAATTTGCTAAAGTTGGATACTTTAAGTGGAAGGACTGGTGCTTGTTCTCAGCCAATGCCACGAGCCAAAGAGACACTTTCAAGAGTAGCTGTGGCAAGAACTTCATCAGAGAAGTATTCAGATTTTGGCCTGCTCACCTCAGATTCTTCTAAGGAGCAACGTAAATCATGTGATATCTGCAGACGATCTGAGACTATGTTAAATCCCATCCTAGTCTGCTCTGGTTGCAAGGTTGCAGTGCACTTGGATTGCTATCATAGTGTGAAAGAGACAATGGGTCCATGGTATTGTGAATTATGTGAAGATTTATCGTCTAGAAGCTGTGGGGCATCTGCTATCAATTTCTGGGAGAAGCCTTATCTTGCTGCAGAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGACCTCTGATGGTCAATGGGTTCATGCATTCTGTGCTGAGTGGGTTTTTGAGTCAACATTCAGAAGAGGACAAATAAATGCTGTTGAAGGAATGGAGACTGTGCCAAAAGGAGTTGATATTTGTTGCATCTGCCACCGCAAACATGGTGTATGCATGAAGTGTTGCTATGGCCATTGTCAAACTACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTACATGAATTTGAGGACTGCTGGTGGCAAGCCGCAACACAAGGCTTACTGTGAAAAGCATAGTTTAGAGCAGAAGGCAAAGGCTGAAACTCAAAAACATGGAATCGAAGAGTTAAAAAGTATCAAGCAAATTAGGGTTGAACTAGAGAGATTACGTCTTCTTTGTGAAAGAATTGTAAAACGTGAAAAAATAAAGCGGGAATTGGTTCTATGCTCACATGACATACTTGCCTTTAAAAGAGATCATGTTGCTAGGTCTGTGCTGGTTCGTAGCCCTTTCATCCTTCCGGATGGTAGTTCAGAATCAGCTACAACGTCCCTTAAAGGGAACACAGAGGGGTACAGATCATGCAGTGAAGCACTCCAAAGATCAGATGACGTAACTGTGGACAGTTCAGTTTCTGCTATGCACCGTGTCAGAGTTGCCATATCCATGGACACGGACCCAAAATTAGATGATGACTGCTCAACCTCACAAAGTCACTATAATCACAAGATTGCAGAGAGGATGCAATTTTCTGGCAAGCAGATTCCTCATAGAGCTTCCGCCACATCACGTAATCTTTCGGATGATGGTGGATGGAGATCCAAATCTAGAAAGCATGCTGAGACATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTCTATGTTACCTAAAGGATATGCATATGTTCCTGCTGATTGCCTGTCAAATGACAAGCAGTCTAACGAGGATGTATATGCTAGTGGACCAGTGGAACATGACGGGTAA 4386 0.4414 MLWFLCTLLLPAMTGDRCHRLKTMAEEEGGVAVEEKACPRNFPADQPETRDDSAALEIDYFSQARKALSERSPFDVAEETSTSGTVTLPSGLASLLNRHGDNRRRHKKSHSGGGEKKKSSSRANEKSRGYNIWVETEEYFRDLTFSDIDTLLEASSSSCLASRECFSIPRLGNAPRFNVVSTSSEAVDEKTPVPRFNVVSSEDVKKTGEEVKEEDGLLGIESIDNVAAEKDLPRDDKSHDDSDSSIGLEWFLGCKNKVSLTSERPSKKRKLLGGDAGLEKVLMTSPCDADQPFCHYCGRGDTDSDSNRLIVCTSCKVAVHRKCYGMQDDVDESWLCSWCKRKGDFDDSVDPCVLCPNKGGALKPVNSSVEGFGSVQFAHLFCCLWMPEVYIGDLNKMEPVMNVEGIKETRRKLVCNVCKVKCGACVRCSHGTCRTSFHPLCAREARHRMEVWAKYDNDNVELRAFCLKHSDLQEKRSMLPLGGSNAVSEANGLPVTLPVNSEHDIKIGCGNGGLASVNSEDILDHNDEPPDEGFSDCSLIAHDISGCDAMPQHNVGVVGRTGENVDASDSLSFALVLKKSAFTLWQLIDRGKVDVKDIAPDIGITPDTLTANINEDYMAPDVRHKIVNWLKAHVYTSAFQKGLKVKFKPANASKDESEATDGSDTLPISDSGLPDPVAVKSVPPRRRTVSNIRILKDNKVICSSEGVTSENGMQLDKLRVGHPERENPGSSKEASFPVATEMSLTKREDISPEVQGNADKMQNSGCVSEEKSTDCLQNSSMLSDQCCPVHSASEPPDSGFIKVEPISSYIHPYINKKLLHIRDGVLLEDIICSREEGNSSLVESSGANGCSSSQNQQLTSIDIFKPDQANMEQLFGARKLELVEFPPEDEVEGELIYFQYRLLQNAVARKRLTDNLVYSVAKSLPQEIDKVHQQRWDAVIVNQYLRDLKEAKKRGRKERRHREAQAVLAAATAAAAASSRVSSFRKDTLDESMQQENLLKLDTLSGRTGACSQPMPRAKETLSRVAVARTSSEKYSDFGLLTSDSSKEQRKSCDICRRSETMLNPILVCSGCKVAVHLDCYHSVKETMGPWYCELCEDLSSRSCGASAINFWEKPYLAAECALCGGTTGAFRKTSDGQWVHAFCAEWVFESTFRRGQINAVEGMETVPKGVDICCICHRKHGVCMKCCYGHCQTTFHPSCARSAGLYMNLRTAGGKPQHKAYCEKHSLEQKAKAETQKHGIEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVRSPFILPDGSSESATTSLKGNTEGYRSCSEALQRSDDVTVDSSVSAMHRVRVAISMDTDPKLDDDCSTSQSHYNHKIAERMQFSGKQIPHRASATSRNLSDDGGWRSKSRKHAETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKQSNEDVYASGPVEHDG 1461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi679g00005 1461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1040 1102 IPR013083 -
Gabi679g00005 1461 MobiDBLite consensus disorder prediction 72 127 - -
Gabi679g00005 1461 Coils Coil 1247 1267 - -
Gabi679g00005 1461 ProSitePatterns Zinc finger PHD-type signature. 1053 1096 IPR019786 -
Gabi679g00005 1461 ProSiteProfiles Extended PHD (ePHD) domain profile. 1118 1227 IPR034732 -
Gabi679g00005 1461 PANTHER PHD FINGER PROTEINS 82 988 - -
Gabi679g00005 1461 MobiDBLite consensus disorder prediction 1439 1461 - -
Gabi679g00005 1461 CDD ePHD 1121 1226 - -
Gabi679g00005 1461 Pfam PHD-finger 1064 1097 - -
Gabi679g00005 1461 Pfam PHD-finger 307 340 - -
Gabi679g00005 1461 MobiDBLite consensus disorder prediction 75 92 - -
Gabi679g00005 1461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 347 IPR013083 -
Gabi679g00005 1461 MobiDBLite consensus disorder prediction 1383 1397 - -
Gabi679g00005 1461 MobiDBLite consensus disorder prediction 1380 1407 - -
Gabi679g00005 1461 SUPERFAMILY FYVE/PHD zinc finger 284 345 IPR011011 -
Gabi679g00005 1461 MobiDBLite consensus disorder prediction 650 681 - -
Gabi679g00005 1461 ProSiteProfiles Extended PHD (ePHD) domain profile. 349 470 IPR034732 -
Gabi679g00005 1461 SMART PHD_3 1173 1227 IPR001965 -
Gabi679g00005 1461 SMART PHD_3 1052 1097 IPR001965 -
Gabi679g00005 1461 SMART PHD_3 414 470 IPR001965 -
Gabi679g00005 1461 SMART PHD_3 293 340 IPR001965 -
Gabi679g00005 1461 SUPERFAMILY FYVE/PHD zinc finger 1045 1097 IPR011011 -
Gabi679g00005 1461 ProSitePatterns Zinc finger PHD-type signature. 294 339 IPR019786 -
Gabi679g00005 1461 Pfam PHD-zinc-finger like domain 1120 1226 - -
Gabi679g00005 1461 Pfam PHD-zinc-finger like domain 351 469 - -
Gabi679g00005 1461 ProSiteProfiles Zinc finger PHD-type profile. 1050 1099 IPR019787 -
Gabi679g00005 1461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1117 1228 IPR013083 -
Gabi679g00005 1461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 472 IPR013083 -
Gabi679g00005 1461 ProSiteProfiles Zinc finger PHD-type profile. 291 342 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi679g00005 Gabi-Chr679 49878 71271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi679g00005 288 476 C2H2 Transcription Factor Family AT3G14740 29.688 7.99e-17 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi679g00005 zf-HC5HC2H_2 2.1e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi679g00005 - - gmx:100775631 2159.41