Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi679g00004 ATGCTTTGGTTCTTGTGTACCTTGTTGTTGCCGGCGATGACCGGGGACCGATGTCACCGGTTGAAGACCATGGCGGAAGAAGAAGGGGGTGTCGCCGTCGAGGAGAAGGCCTGCCCCAGGAATTTTCCGGCGGACCAACCGGAAACTCGTGACGACTCCGCTGCATTAGAGATTGATTACTTCTCGCAGGCTAGGAAAGCGCTAAGCGAGCGCTCGCCTTTCGATGTTGCCGAGGAAACGTCGACTTCTGGTACGGTTACTCTGCCGAGTGGGTTGGCGAGTTTGTTGAACCGTCACGGCGATAACCGGAGGCGCCACAAGAAGTCTCATTCTGGTGGTGGGGAGAAGAAGAAATCGTCGTCTAGAGCGAATGAGAAGTCGCGCGGTTACAACATTTGGGTTGAGACCGAGGAGTACTTTAGGGACTTGACGTTTTCTGATATCGACACCTTGCTTGAGGCTTCTTCGTCTTCTTGTTTAGCTTCTCGGGAGTGTTTTTCTATTCCGCGTTTGGGAAATGCTCCAAGGTTCAATGTAGTTAGTACTAGTAGTGAGGCCGTGGATGAAAAGACGCCTGTTCCAAGATTCAACGTAGTTAGTAGTGAGGATGTGAAGAAGACTGGTGAAGAAGTGAAAGAAGAGGATGGTTTGTTGGGAATTGAGTCAATTGACAATGTTGCCGCTGAGAAAGATTTGCCTCGGGATGACAAGAGTCACGATGATTCTGATTCTTCTATTGGTTTAGAGTGGTTTTTAGGTTGTAAGAATAAGGTTTCCTTAACTTCCGAGCGCCCTTCGAAGAAAAGGAAGCTTTTGGGTGGTGATGCTGGTCTGGAGAAAGTTTTAATGACCAGTCCTTGTGATGCGGACCAACCGTTTTGTCATTACTGTGGCAGGGGAGACACTGACAGTGATTCCAATCGGTTAATTGTCTGCACTTCTTGTAAAGTTGCAGTTCATCGGAAGTGCTATGGTATGCAAGATGATGTAGATGAGTCTTGGTTGTGTTCTTGGTGTAAGCGAAAGGGTGATTTTGATGACTCTGTGGATCCTTGTGTTCTTTGCCCAAACAAGGGTGGCGCATTAAAACCGGTTAATAGCAGTGTGGAAGGTTTTGGGTCTGTCCAGTTTGCGCACCTGTTCTGTTGCCTGTGGATGCCCGAGGTTTATATAGGCGATTTGAATAAGATGGAGCCTGTTATGAATGTGGAAGGAATCAAGGAAACACGGAGAAAATTAGTGTGTAATGTTTGCAAAGTGAAGTGTGGTGCATGTGTGCGGTGTAGCCATGGAACCTGCAGGACTTCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACATAGGATGGAGGTTTGGGCAAAGTATGATAATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAGCATTCAGATCTACAAGAGAAAAGAAGCATGCTGCCACTGGGAGGCTCTAATGCAGTTTCAGAAGCCAATGGCCTTCCAGTGACATTGCCAGTGAACAGTGAACACGATATTAAAATTGGTTGTGGGAATGGAGGGTTAGCGTCTGTCAATAGTGAAGACATATTGGACCATAATGATGAGCCACCAGATGAAGGATTTTCTGATTGTAGTTTAATTGCTCACGACATTTCGGGATGTGATGCTATGCCACAACATAATGTTGGAGTGGTTGGGAGGACCGGTGAGAATGTTGATGCGTCTGACTCCCTCAGTTTTGCACTTGTTTTGAAGAAGTTGATAGATCGAGGAAAAGTTGATGTAAAAGATATAGCACCGGACATTGGTATTACACCAGATACATTAACTGCAAATATCAATGAAGATTATATGGCCCCTGATGTGCGACACAAAATAGTTAATTGGCTAAAAGCCCATGTATATACTAGTGCATTTCAGAAAGGTCTAAAAGTCAAATTCAAACCAGCCAATGCATCCAAGGATGAAAGTGAAGCCACAGATGGTTCTGATACTTTACCAATATCAGATTCAGGTTTGCCGGATCCTGTTGCTGTTAAGTCGGTACCACCAAGGAGAAGAACGGTCAGTAACATTAGGATTTTGAAGGATAATAAAGTGATATGCTCATCTGAGGGAGTCACTAGCGAGAATGGGATGCAATTGGACAAGTTAAGAGTAGGTCATCCTGAGCGTGAAAATCCTGGAAGTTCCAAGGAAGCATCCTTTCCTGTTGCGACTGAAATGAGTTTAACCAAGCGTGAGGATATATCTCCCGAGGTTCAAGGCAATGCTGATAAAATGCAGAATTCTGGATGTGTTTCAGAAGAAAAGTCTACTGATTGTTTGCAGAATTCTTCTATGCTTTCTGATCAGTGCTGTCCTGTTCATTCTGCTTCAGAACCACCTGATTCTGGTTTCATAAAGGTGGAACCGATATCTAGTTACATTCACCCATACATCAACAAGAAATTGCTGCATATTCGTGATGGGGTGCTCTTGGAGGACATTATATGTTCACGTGAGGAGGGAAATTCTTCTTTGGTTGAATCATCAGGGGCTAATGGCTGCTCAAGTAGCCAAAATCAGCAATTAACTAGCATTGACATTTTCAAGCCTGATCAAGCAAATATGGAGCAGTTGTTTGGGGCTAGAAAATTGGAACTTGTGGAGTTTCCTCCAGAAGATGAAGTGGAGGGGGAACTTATATATTTTCAGTATAGATTACTGCAGAATGCAGTTGCAAGAAAGAGGCTTACTGATAACTTGGTCTACAGTGTTGCCAAGAGTTTGCCACAGGAGATTGATAAAGTACATCAGCAAAGATGGGATGCTGTGATTGTTAATCAATATCTACGTGATCTTAAGGAGGCCAAAAAACGTGGCAGAAAAGAAAGAAGGCACAGGGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCTGCTGCTGCAGCATCCTCTAGGGTTTCTTCTTTCAGAAAAGACACCTTAGATGAATCTATGCAACAGGAGAATTTGCTAAAGTTGGATACTTTAAGTGGAAGGACTGGTGCTTGTTCTCAGCCAATGCCACGAGCCAAAGAGACACTTTCAAGAGTAGCTGTGGCAAGAACTTCATCAGAGAAGTATTCAGATTTTGGCCTGCTCACCTCAGATTCTTCTAAGGAGCAACGTAAATCATGTGATATCTGCAGACGATCTGAGACTATGTTAAATCCCATCCTAGTCTGCTCTGGTTGCAAGGTTGCAGTGCACTTGGATTGCTATCATAGTGTGAAAGAGACAATGGGTCCATGGTATTGTGAATTATGTGAAGATTTATCGTCTAGAAGCTGTGGGGCATCTGCTATCAATTTCTGGGAGAAGCCTTATCTTGCTGCAGAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGACCTCTGATGGTCAATGGGTTCATGCATTCTGTGCTGAGTGGGTTTTTGAGTCAACATTCAGAAGAGGACAAATAAATGCTGTTGAAGGAATGGAGACTGTGCCAAAAGGAGTTGATATTTGTTGCATCTGCCACCGCAAACATGGTGTATGCATGAAGTGTTGCTATGGCCATTGTCAAACTACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTACATGAATTTGAGGACTGCTGGTGGCAAGCCGCAACACAAGGCTTACTGTGAAAAGCATAGTTTAGAGCAGAAGGCAAAGGCTGAAACTCAAAAACATGGAATCGAAGAGTTAAAAAGTATCAAGCAAATTAGGGTTGAACTAGAGAGATTACGTCTTCTTTGTGAAAGAATTGTAAAACGTGAAAAAATAAAGCGGGAATTGGTTCTATGCTCACATGACATACTTGCCTTTAAAAGAGATCATGTTGCTAGGTCTGTGCTGGTTCGTAGCCCTTTCATCCTTCCGGATGGTAGTTCAGAATCAGCTACAACGTCCCTTAAAGGGAACACAGAGGGGTACAGATCATGCAGTGAAGCACTCCAAAGATCAGATGACGTAACTGTGGACAGTTCAGTTTCTGCTATGCACCGTGTCAGAGTTGCCATATCCATGGACACGGACCCAAAATTAGATGATGACTGCTCAACCTCACAAAGTCACTATAATCACAAGATTGCAGAGAGGATGCAATTTTCTGGCAAGCAGATTCCTCATAGAGCTTCCGCCACATCACGTAATCTTTCGGATGATGGTGGATGGAGATCCAAATCTAGAAAGCATGCTGAGACATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTCTATGTTACCTAAAGGATATGCATATGTTCCTGCTGATTGCCTGTCAAATGACAAGCAGTCTAACGAGGATGTATATGCTAGTGGACCAGTGGAACATGACGGGTAA 4365 0.4408 MLWFLCTLLLPAMTGDRCHRLKTMAEEEGGVAVEEKACPRNFPADQPETRDDSAALEIDYFSQARKALSERSPFDVAEETSTSGTVTLPSGLASLLNRHGDNRRRHKKSHSGGGEKKKSSSRANEKSRGYNIWVETEEYFRDLTFSDIDTLLEASSSSCLASRECFSIPRLGNAPRFNVVSTSSEAVDEKTPVPRFNVVSSEDVKKTGEEVKEEDGLLGIESIDNVAAEKDLPRDDKSHDDSDSSIGLEWFLGCKNKVSLTSERPSKKRKLLGGDAGLEKVLMTSPCDADQPFCHYCGRGDTDSDSNRLIVCTSCKVAVHRKCYGMQDDVDESWLCSWCKRKGDFDDSVDPCVLCPNKGGALKPVNSSVEGFGSVQFAHLFCCLWMPEVYIGDLNKMEPVMNVEGIKETRRKLVCNVCKVKCGACVRCSHGTCRTSFHPLCAREARHRMEVWAKYDNDNVELRAFCLKHSDLQEKRSMLPLGGSNAVSEANGLPVTLPVNSEHDIKIGCGNGGLASVNSEDILDHNDEPPDEGFSDCSLIAHDISGCDAMPQHNVGVVGRTGENVDASDSLSFALVLKKLIDRGKVDVKDIAPDIGITPDTLTANINEDYMAPDVRHKIVNWLKAHVYTSAFQKGLKVKFKPANASKDESEATDGSDTLPISDSGLPDPVAVKSVPPRRRTVSNIRILKDNKVICSSEGVTSENGMQLDKLRVGHPERENPGSSKEASFPVATEMSLTKREDISPEVQGNADKMQNSGCVSEEKSTDCLQNSSMLSDQCCPVHSASEPPDSGFIKVEPISSYIHPYINKKLLHIRDGVLLEDIICSREEGNSSLVESSGANGCSSSQNQQLTSIDIFKPDQANMEQLFGARKLELVEFPPEDEVEGELIYFQYRLLQNAVARKRLTDNLVYSVAKSLPQEIDKVHQQRWDAVIVNQYLRDLKEAKKRGRKERRHREAQAVLAAATAAAAASSRVSSFRKDTLDESMQQENLLKLDTLSGRTGACSQPMPRAKETLSRVAVARTSSEKYSDFGLLTSDSSKEQRKSCDICRRSETMLNPILVCSGCKVAVHLDCYHSVKETMGPWYCELCEDLSSRSCGASAINFWEKPYLAAECALCGGTTGAFRKTSDGQWVHAFCAEWVFESTFRRGQINAVEGMETVPKGVDICCICHRKHGVCMKCCYGHCQTTFHPSCARSAGLYMNLRTAGGKPQHKAYCEKHSLEQKAKAETQKHGIEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVRSPFILPDGSSESATTSLKGNTEGYRSCSEALQRSDDVTVDSSVSAMHRVRVAISMDTDPKLDDDCSTSQSHYNHKIAERMQFSGKQIPHRASATSRNLSDDGGWRSKSRKHAETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKQSNEDVYASGPVEHDG 1454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi679g00004 1454 PANTHER PHD FINGER PROTEINS 81 980 - -
Gabi679g00004 1454 MobiDBLite consensus disorder prediction 642 674 - -
Gabi679g00004 1454 CDD ePHD 1114 1219 - -
Gabi679g00004 1454 MobiDBLite consensus disorder prediction 72 127 - -
Gabi679g00004 1454 Pfam PHD-finger 1057 1090 - -
Gabi679g00004 1454 Pfam PHD-finger 307 340 - -
Gabi679g00004 1454 MobiDBLite consensus disorder prediction 1376 1390 - -
Gabi679g00004 1454 MobiDBLite consensus disorder prediction 1373 1400 - -
Gabi679g00004 1454 SMART PHD_3 1045 1090 IPR001965 -
Gabi679g00004 1454 SMART PHD_3 1166 1220 IPR001965 -
Gabi679g00004 1454 SMART PHD_3 414 470 IPR001965 -
Gabi679g00004 1454 SMART PHD_3 293 340 IPR001965 -
Gabi679g00004 1454 ProSitePatterns Zinc finger PHD-type signature. 1046 1089 IPR019786 -
Gabi679g00004 1454 ProSiteProfiles Zinc finger PHD-type profile. 1043 1092 IPR019787 -
Gabi679g00004 1454 ProSiteProfiles Extended PHD (ePHD) domain profile. 1111 1220 IPR034732 -
Gabi679g00004 1454 MobiDBLite consensus disorder prediction 75 92 - -
Gabi679g00004 1454 SUPERFAMILY FYVE/PHD zinc finger 284 345 IPR011011 -
Gabi679g00004 1454 MobiDBLite consensus disorder prediction 1432 1454 - -
Gabi679g00004 1454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 347 IPR013083 -
Gabi679g00004 1454 ProSiteProfiles Extended PHD (ePHD) domain profile. 349 470 IPR034732 -
Gabi679g00004 1454 ProSitePatterns Zinc finger PHD-type signature. 294 339 IPR019786 -
Gabi679g00004 1454 SUPERFAMILY FYVE/PHD zinc finger 1038 1090 IPR011011 -
Gabi679g00004 1454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1110 1221 IPR013083 -
Gabi679g00004 1454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 472 IPR013083 -
Gabi679g00004 1454 Pfam PHD-zinc-finger like domain 1113 1219 - -
Gabi679g00004 1454 Pfam PHD-zinc-finger like domain 351 469 - -
Gabi679g00004 1454 Coils Coil 1240 1260 - -
Gabi679g00004 1454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1033 1095 IPR013083 -
Gabi679g00004 1454 ProSiteProfiles Zinc finger PHD-type profile. 291 342 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi679g00004 Gabi-Chr679 49878 71271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi679g00004 288 476 C2H2 Transcription Factor Family AT3G14740 29.688 8.17e-17 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi679g00004 zf-HC5HC2H_2 2e-23 CL0390