LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi679g00001	GTCATTGGTTTAATCTCAGGAATTGGGAAAGTTTGTGATCGTGTGGTTTCTGGTAGGAAGACAAAAATGGTGGTGTTGGAGCTTGACGACCTGAGTCTCTCGATTGATGGTGTGGAAAGTAGTACAAGGATGACTCAATTGTCTACTCAGTCATCCTATTCTTTCGAAAATGATTTTCTTAAGGAGACTGAAAAAAAGTCTATCAGTGATGTGAAACTTTGTGTTGATGTAACTACCTGCATCACATACAGGACTATAAAGGCAATTGAGAGCAAATACAACTGGTGGTACAAGTCATGCAAAAAGTGTCCATTTTCCGTTTATGAGAATTTTGAGAAGTGGTATTGTAAGAACTGCCAAAAACATTGGGAAGATTATTATCCGAGATTTAGTGTTCAGGTCAGAGTTGTGGATAACACAGATTCCGCATCCTTTATTCTGTTTGATCGCGACTGTGTGTTTTTGTTGGGAATGGGTGCTGCTGAATTGCGCGAGCTGCATTTCAAGAGGGGTGCCGATTTGGATCAATTTCCAAATGAGTTAAATGTTCTGAATGAAAAGTCAATGTTGTTCAAGATAAATGTTAAGCAAAAGGATTTGAACACAAATAGTGAGCCCAAATATCAAGTTTCCAAAATTTGTATCAGCGAAGACATAATCTCAGCGTTCATTAAGTCTCTTATAGATCTAAATGATGAAGCAAATTTCGATAATGCACGCGAAAATGAAGTTGTTTCGTCGGAACTGGAAAAGGCTGCGGATGTTGAAAGTCAGACCTGTGACAGTGCTGACGTTAGTGATGTCTCTCTGACGATGTTGACACCTGTGCTCACTTCTCATGATTCCATTGCTGGAGAATTTAAATTTTCAGTTGTTCGGCCGACAAAGAAAATAAAGCTTGTAAAGGAGTTACAGGCAGATGAGAGTACGCTGTAG	936	0.3932	VIGLISGIGKVCDRVVSGRKTKMVVLELDDLSLSIDGVESSTRMTQLSTQSSYSFENDFLKETEKKSISDVKLCVDVTTCITYRTIKAIESKYNWWYKSCKKCPFSVYENFEKWYCKNCQKHWEDYYPRFSVQVRVVDNTDSASFILFDRDCVFLLGMGAAELRELHFKRGADLDQFPNELNVLNEKSMLFKINVKQKDLNTNSEPKYQVSKICISEDIISAFIKSLIDLNDEANFDNARENEVVSSELEKAADVESQTCDSADVSDVSLTMLTPVLTSHDSIAGEFKFSVVRPTKKIKLVKELQADESTL	311

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi679g00001	311	Pfam	Replication factor-A C terminal domain	84	213	IPR013955	-
	Gabi679g00001	311	SUPERFAMILY	Nucleic acid-binding proteins	80	214	IPR012340	-
	Gabi679g00001	311	CDD	RPA1_DBD_C	80	233	IPR047192	-
	Gabi679g00001	311	Gene3D	-	45	221	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi679g00001	Gabi-Chr679	653	2724	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi679g00001	86	213	Core DNA Replication Machinery Family	AT5G08020	27.132	3.68e-09	55.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi679g00001	-		-	adu:107466248	147.902