Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi675g00009 ATGGGCAGGGCTCCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCCCCAGAAGAAGATGCAAAGCTCAAGTCATACATAGAACAAAACGGCACCGGTGGCAACTGGATTGCTTTGCCACAAAAAATTGGCCTGAAGCGTTGTGGCAAGAGTTGCCGTCTAAGGTGGCTAAACTATCTTCGACCTAATCTGAAGCACGGTGGTTTCTCTGAAGAAGAAGACAACATTATTTGCAGCCTTTACATTAGTATTGGAAGCAGGTGGTCGATCATTGCAGCTCAATTGCCAGGAAGAACCGATAATGACATAAAGAACTACTGGAACACGAGGCTGAAAAAGAAGCTTCTTGGAAAGCACCGTAGAGAACAACAGTCACGTAATAGAAGCAACACTGTTAAGCAAGAAAGCAATAATATAAAGAGTGGTGATTGCTTATCCTTTGTTCATGAAAATAATACTCAACAGCCTTATTGGCCACAGATGCCTGTGCTACCATTGCAACCATTTTCATACACAAACCAAGGCCAGTACTGTTTCAACGACCAAGATTCTATTAAAAAGCTTCTTATCAAGCTTGGAGGGAGATTTTCCAATGATTATCATCCTACCCTTAATGGGTTGAATCTTCAATTCTCAGATGGTAGTTCCTCCACGCAACAAATTTATCAAGAACAAGTTCATATAGGCTCTTCTGCTTGCGTTAACACTAGTGTTAACAACAACGAAGTACAATTTAGTGCTGGACTTGACTTGGTGCAAGGACAAAGCAGTTTCACCCCAGAGATTGAGGAAACATTGGTATCTACTAATTATCCACAAAGATTAACTGGGTTGGAGTTCTTCTATGGAGAGGAAGACATGGTGGATGATAAGATAATAGGTTCTACTGCTTGTAGCCAAAGTACTAATTGGGGTGAAACAAGCACACTCAGTTATCAAACTCTCGCTTCGAAATACCAAGGTCAAGGTGTGAGGCAAGAGTTTAGCTACCCTGGGGAGCAATGA 1011 0.4204 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRREQQSRNRSNTVKQESNNIKSGDCLSFVHENNTQQPYWPQMPVLPLQPFSYTNQGQYCFNDQDSIKKLLIKLGGRFSNDYHPTLNGLNLQFSDGSSSTQQIYQEQVHIGSSACVNTSVNNNEVQFSAGLDLVQGQSSFTPEIEETLVSTNYPQRLTGLEFFYGEEDMVDDKIIGSTACSQSTNWGETSTLSYQTLASKYQGQGVRQEFSYPGEQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi675g00009 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gabi675g00009 336 CDD SANT 71 113 IPR001005 -
Gabi675g00009 336 SMART sant 13 64 IPR001005 -
Gabi675g00009 336 SMART sant 67 115 IPR001005 -
Gabi675g00009 336 Gene3D - 7 68 - -
Gabi675g00009 336 MobiDBLite consensus disorder prediction 119 139 - -
Gabi675g00009 336 PANTHER OS09G0431300 PROTEIN 1 257 - -
Gabi675g00009 336 FunFam Transcription factor RAX3 7 68 - -
Gabi675g00009 336 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gabi675g00009 336 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gabi675g00009 336 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gabi675g00009 336 CDD SANT 16 62 IPR001005 -
Gabi675g00009 336 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gabi675g00009 336 Gene3D - 69 143 - -
Gabi675g00009 336 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gabi675g00009 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gabi675g00009 336 FunFam Transcription factor RAX3 70 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi675g00009 Gabi-Chr675 133284 134656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi675g00009 1 193 MYB Transcription Factor Family AT3G49690 66.327 7.10e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi675g00009 Myb_DNA-binding 3.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi675g00009 K09422 - gmx:100800290 453.751