Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi674g00006 ATGTCTTCTTCATCCTCCAATCGTCAATGGGTCTACGACGTGTTCCTGAGCTTCAGAGGGGAAGACACTTGTTCCGGCTTCGTTTCTCACCTCCAAAATACCTTCTCAAGATCTGGAATCAACACTTACATCGATTACAACCTTGAGAAGGGAACAGAGTTGGGACCTGAACTATTGCGAGCAATAGAAGGGTCTCATATATCTTTGGTTGTTTTCTCCCAAAACTATGCAGATTCTAGTTGGTGCCTTAATGAGCTGACAAAAATAATGGAATGCCACAGAACTTATGGCCAGGTGATTCTGCCCATATTTTACGATGTTGACCCATCTCATGTACGTCATCAGAAGGGAGCAATTGAAAAAGCCTTTGAAAAGTTTTCAGACAAAAATTACTCGCAGGAAGTGTTGTCGAGTTGGAAGAGTGCACTCACCCAAGCTGCAAATATATCTGGTTGGGATATGAGGAATCGCCGGAGCGAAGCTGAAGTATTGGAGAGAATTGTTCATTCAGTTTTACGACAAGTAAACAACACATTTTTGTCCATTACCGATTTTCCTGTTGGATTAGAATCCCGCGTGCAAGAAGTGGTTGGTTTAATTGAAAATCAATCGAGCAAAGTTTGTGTGGTGGGGATCCGGGGTATGGGTGGATCGGGCAAAACAACCACAGCCAAAGCCATTTACAATCAAATTCATCGCAGATTTGTGAATAGAAGTTTCATTGAAAATATTTCTGAAGTTTGTCAACAAGATAGAAGAGGACAAATTGATTTACAAGAACAACTTCTTTTAGATGTCCTAAGAACAGAGGTGAATATCCATAGCATTCGGATGGGAACAACTTTAATCGAAGAAAGCCTTTGTGGAAAAAGGGCACTCGTTGTGTTTGATGATGTGTCTGCTTTTCAGCAGTTAGAAGCCCTATGTGGAAATCGTGAACTGTTTGGTGAAGGAAGTGTAATAATCATTACAACTAGAGATATGCGCCTACTTACACAATTTGAGGTTGACTATGTTTATGAAATGAAGCCAAATAATGAAAATGAGTCCCTTGAGCTCTTTAGTTGGCATGCTTTCAGAGATGCAAGTCCAAGAGAAGACTTGATTGAACTCTCACAAAATATTGTTGCTTACTGTGGAGGACTACCACTAGCTCTCGAAGTCCTTGGATCTTGCTTATTTGGGAGGACGAAACAAGAATGGGAAAGTGTATTATCAAAACTGGAAATAATTCCCAATGATCGAGTTCTACAGAAACTAAGAATAAGCTTTGATGGTTTGCGTGATCAGATGGAAAGGGATATATTTCTTAACATATGTTGTTTCTTTATCGGTAAAGACAGAGCCTATTGTTGA 1356 0.4004 MSSSSSNRQWVYDVFLSFRGEDTCSGFVSHLQNTFSRSGINTYIDYNLEKGTELGPELLRAIEGSHISLVVFSQNYADSSWCLNELTKIMECHRTYGQVILPIFYDVDPSHVRHQKGAIEKAFEKFSDKNYSQEVLSSWKSALTQAANISGWDMRNRRSEAEVLERIVHSVLRQVNNTFLSITDFPVGLESRVQEVVGLIENQSSKVCVVGIRGMGGSGKTTTAKAIYNQIHRRFVNRSFIENISEVCQQDRRGQIDLQEQLLLDVLRTEVNIHSIRMGTTLIEESLCGKRALVVFDDVSAFQQLEALCGNRELFGEGSVIIITTRDMRLLTQFEVDYVYEMKPNNENESLELFSWHAFRDASPREDLIELSQNIVAYCGGLPLALEVLGSCLFGRTKQEWESVLSKLEIIPNDRVLQKLRISFDGLRDQMERDIFLNICCFFIGKDRAYC 451
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi674g00006 451 ProSiteProfiles TIR domain profile. 10 175 IPR000157 GO:0007165
Gabi674g00006 451 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 177 - -
Gabi674g00006 451 Gene3D - 346 428 IPR042197 -
Gabi674g00006 451 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 152 IPR035897 -
Gabi674g00006 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 438 IPR027417 -
Gabi674g00006 451 Gene3D - 182 339 IPR027417 -
Gabi674g00006 451 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 443 IPR044974 GO:0006952
Gabi674g00006 451 Pfam TIR domain 12 184 IPR000157 GO:0007165
Gabi674g00006 451 Gene3D - 5 181 IPR035897 -
Gabi674g00006 451 Pfam NB-ARC domain 194 409 IPR002182 GO:0043531
Gabi674g00006 451 PRINTS Disease resistance protein signature 209 224 - -
Gabi674g00006 451 PRINTS Disease resistance protein signature 286 300 - -
Gabi674g00006 451 PRINTS Disease resistance protein signature 379 393 - -
Gabi674g00006 451 SMART till_3 11 149 IPR000157 GO:0007165
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi674g00006 Gabi-Chr674 123841 125363 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi674g00006 12 447 WRKY Transcription Factor Family AT4G12020 28.125 1.22e-38 147