Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi671g00004 ATGCAAGAAGAAGAGGCTTTGATTTTAGAGACAGAAATTCTATTATTTTTTAGAGAGAGAGAGAGAAAGAGAAGGACTTTGAAAAGAAGAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGATGTCGTCACGTTCGGGGCAAGGTGGTGGTGGGAGCTCGAGGACCCGTGTGGGGAAGTACGAGCTGGGTCGAACCCTGGGCGAGGGCAATTTCGCGAAGGTTAAGTTTGCGAGGCACGTTGGTACTGGTGAGAACGTGGCCATCAAGATTCTTGACAAGGAGAAAGTTCTCAAGCACAAAATGATTGGCCAGATAAAACGAGAAATATCAACAATGAAACTGATTAGACACCCAAATGTCATACGCATGTACGAGGTGATGGCTAGCAAAACAAAGATATACATTGTACTGGAGTTTGTGACTGGAGGGGAGCTGTTTGATAAAATTGCTCGCAACGGAAGGTTGAAAGAAGATGAAGCAAGAAAATATTTTCAACAGCTTATATGTGCTGTAGATTACTGCCATAGTAGAGGTGTTTTCCACAGAGACTTAAAGCCGGAGAATTTGTTGCTGGATGCTAACGGAGTGCTTAAAGTATCTGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGGGAAGATGGGCTACTTCACACAACATGTGGTACGCCAAATTATGTTGCTCCAGAGGTGATACACAACAAAGGCTATGATGGTGCAAAGGCAGATCTTTGGTCATGTGGTGTTATTCTTTTTGTTTTAATGGCTGGCTATTTGCCCTTCGAAGAAAACAATCTTATGGCTTTATATAAAAAGATTTTCAAGGCTGAGTTCACATGTCCTCCATGGTTCTCTTCAAGTGCAAAGAAGCTAATCAAAAGAATCCTTGATCCGAGTCCTGCTACTCGGATTACAATTGCTGAGGTCATTGAGAACGAGTGGTTCAAGAAGGGATATAAGCCTCCCGTATTTGAACAGGCTAATGTTAGTCTTGATGATGTAAATTCTATTTTCAGTGAATCTATGGATTCACAAAATCTTGTTGTTGAGAGGCGTGAGGTTGGGCCTGTGGCACCTGTGACCATGAATGCATTTGAGCTTATATCTAAATCTCAGGGCCTCAACCTTAGTAGTCTTTTTGAGAAGCAAATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCAGCAAATGAGATAATCTCAAAAATTGAGCAAGCTGCAGGACCTCTGGGTTTTGATGTTAAGAAGAACAACTGTAAGTTGAAGATTCAAGGGGAAAAGACTGGAAGGAAAGGTCACCTATCTGTTTCCACTGAGATCTTTGAGGTGGCCCCTTCGCTTTACATGGTTGAGCTACGTAAGGCTGAAGGAGATACTCTGGAATTTCACAAGTTCTACAAGAGTCTATCAACTGGGCTGAAAGATATTGTTTGGAAAGCTGACCCTATCGATGAAGAAAAAGATGGTGCCAGTACTTCAAAATAA 1512 0.4134 MQEEEALILETEILLFFRERERKRRTLKRRRRKKERKKERKKERKKMSSRSGQGGGGSSRTRVGKYELGRTLGEGNFAKVKFARHVGTGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIARNGRLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLMAGYLPFEENNLMALYKKIFKAEFTCPPWFSSSAKKLIKRILDPSPATRITIAEVIENEWFKKGYKPPVFEQANVSLDDVNSIFSESMDSQNLVVERREVGPVAPVTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSANEIISKIEQAAGPLGFDVKKNNCKLKIQGEKTGRKGHLSVSTEIFEVAPSLYMVELRKAEGDTLEFHKFYKSLSTGLKDIVWKADPIDEEKDGASTSK 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi671g00004 503 ProSiteProfiles NAF domain profile. 363 387 IPR018451 GO:0007165
Gabi671g00004 503 Gene3D Transferase(Phosphotransferase) domain 1 146 328 - -
Gabi671g00004 503 Gene3D Kinase associated domain 1, KA1 363 488 - -
Gabi671g00004 503 Coils Coil 17 44 - -
Gabi671g00004 503 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Gabi671g00004 503 FunFam Non-specific serine/threonine protein kinase 59 359 - -
Gabi671g00004 503 FunFam Non-specific serine/threonine protein kinase 363 488 - -
Gabi671g00004 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Gabi671g00004 503 MobiDBLite consensus disorder prediction 24 64 - -
Gabi671g00004 503 Pfam Protein kinase domain 66 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi671g00004 503 CDD CIPK_C 369 484 - -
Gabi671g00004 503 Pfam NAF domain 365 425 IPR004041 GO:0007165
Gabi671g00004 503 Gene3D Phosphorylase Kinase; domain 1 56 145 - -
Gabi671g00004 503 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 61 480 - -
Gabi671g00004 503 SMART serkin_6 66 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi671g00004 503 MobiDBLite consensus disorder prediction 24 47 - -
Gabi671g00004 503 ProSiteProfiles Protein kinase domain profile. 66 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi671g00004 503 FunFam Non-specific serine/threonine protein kinase 57 145 - -
Gabi671g00004 503 CDD STKc_SnRK3 65 320 - -
Gabi671g00004 503 SUPERFAMILY Protein kinase-like (PK-like) 63 355 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi671g00004 Gabi-Chr671 92014 100863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi671g00004 58 496 CBL-interacting serine-threonine protein kinases AT1G01140 70.337 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi671g00004 Pkinase 1.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi671g00004 - - gmx:100788746 843.573