Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi668g00005 ATGAGCATGGCTTCTACACCTACTGCTTCATCTTCTATCTGCAACAGAATCTATATCCTCTCCTTCACCAACTCTTCCATTTCACACACCCTTAACTTCCCACAAAGAACCAAATCCCCAAAACCCCTCAACCTCAAGCCCAAACTTTTCACTATTTCTCATCTCTCACCCTACCATCTTCACCTGCCTTCAGTTTCCTCCCACAATTTCCAAGTCACTCAAGAAGACCCTGAACCTGAAACCTTCCAAAAATCAGAGCCAAAGGTGTCACACTCTAACCAATCAGAGAGACTCTTTGTGGGAAACTTACCTTATTCATTGCCTTCTTCCCAATTGGCTGAGCTCTTTGGTGAAGCTGGCAATGTTGTCTCTGTGGAGATTGTGTATGATGACATTACGGATAGAAGCAGAGGGTTTGCGTTTGTTACAATGGGGAGCGTTGAGGATGCTGAACAAGCAATTCGAATGTTTGATGGCTCTCAAGTTGGAGGTAGGATTATTAAGGTAAACGTCCCTAAAGTTCCCAAAGGAGATGAAGGGCTAGTAATGGGTTCAAAATACAAAGGCTATGTAGACAGCCCTCACAAGATCTATGCTGGAAACCTTGATTGGGGTTTGACTTCCCAGGGTCTTAGAGATGCCTTTGCTGAGCAGCCAGGCTTACTGAGTGCCAAGGTCATCTATGAAAGGAACAGAGGAAAATCTCGGGGATATGGATTTGTCACTTTTGAAACTGCCAAGGATGTAGAGGCTGCTTTGAATGATATGAATGGAGATTCAAGGCAGACCCTTAATACTGAATTCGGCTGCAGACAAAAAGCCATCATCTCCTCTGGTAATTGA 843 0.4425 MSMASTPTASSSICNRIYILSFTNSSISHTLNFPQRTKSPKPLNLKPKLFTISHLSPYHLHLPSVSSHNFQVTQEDPEPETFQKSEPKVSHSNQSERLFVGNLPYSLPSSQLAELFGEAGNVVSVEIVYDDITDRSRGFAFVTMGSVEDAEQAIRMFDGSQVGGRIIKVNVPKVPKGDEGLVMGSKYKGYVDSPHKIYAGNLDWGLTSQGLRDAFAEQPGLLSAKVIYERNRGKSRGYGFVTFETAKDVEAALNDMNGDSRQTLNTEFGCRQKAIISSGN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi668g00005 280 MobiDBLite consensus disorder prediction 68 91 - -
Gabi668g00005 280 SUPERFAMILY RNA-binding domain, RBD 96 258 IPR035979 GO:0003676
Gabi668g00005 280 Gene3D - 184 274 IPR012677 -
Gabi668g00005 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
Gabi668g00005 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 271 IPR000504 GO:0003723
Gabi668g00005 280 PANTHER OS02G0815200 PROTEIN 41 258 - -
Gabi668g00005 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 259 IPR000504 GO:0003723
Gabi668g00005 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 167 IPR000504 GO:0003723
Gabi668g00005 280 Gene3D - 64 179 IPR012677 -
Gabi668g00005 280 SMART rrm1_1 97 170 IPR000504 GO:0003723
Gabi668g00005 280 SMART rrm1_1 196 267 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi668g00005 Gabi-Chr668 14360 16561 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi668g00005 98 258 Eukaryotic Initiation Factors Gene Family AT2G23350 29.814 2.36e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi668g00005 - - gmx:100789843 337.421