Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi668g00004 ATGAGCATGGCTTCTACACCTACTGCTTCATCTTCTATCTGCAACAGAATCTATATCCTCTCCTTCACCAACTCTTCCATTTCACACACCCTTAACTTCCCACAAAGAACCAAATCCCCAAAACCCCTCAACCTCAAGCCCAAACTTTTCACTATTTCTCATCTCTCACCCTACCATCTTCACCTGCCTTCAGTTTCCTCCCACAATTTCCAAGTCACTCAAGAAGACCCTGAACCTGAAACCTTCCAAAAATCAGAGCCAAAGGTGTCACACTCTAACCAATCAGAGAGACTCTTTGTGGGAAACTTACCTTATTCATTGCCTTCTTCCCAATTGGCTGAGCTCTTTGGTGAAGCTGGCAATGTTGTCTCTGTGGAGATTGTGTATGATGACATTACGGATAGAAGCAGAGGGTTTGCGTTTGTTACAATGGGGAGCGTTGAGGATGCTGAACAAGCAATTCGAATGTTTGATGGCTCTCAAGTTGGAGGTAGGATTATTAAGGTAAACGTCCCTAAAGTTCCCAAAGGAGATGAAGGGCTAGTAATGGGTTCAAAATACAAAGGCTATGTAGACAGCCCTCACAAGATCTATGCTGGAAACCTTGATTGGGGTTTGACTTCCCAGGGTCTTAGAGATGCCTTTGCTGAGCAGCCAGGCTTACTGAGTGCCAAGGTCATCTATGAAAGGAACAGAGGAAAATCTCGGGGATATGGATTTGTCACTTTTGAAACTGCCAAGGATGTAGAGGCTGCTTTGAATGATATGAATGGTGTGGAGATTCAAGGCAGACCCTTAATACTGAATTCGGCTGCAGACAAAAAGCCATCATCTCCTCTGGTAATTGATGAAAATACAGGAAATAATGTTCATAGCTTGGAAATGCTGCTTAGTGTCAGCACATGA 906 0.4382 MSMASTPTASSSICNRIYILSFTNSSISHTLNFPQRTKSPKPLNLKPKLFTISHLSPYHLHLPSVSSHNFQVTQEDPEPETFQKSEPKVSHSNQSERLFVGNLPYSLPSSQLAELFGEAGNVVSVEIVYDDITDRSRGFAFVTMGSVEDAEQAIRMFDGSQVGGRIIKVNVPKVPKGDEGLVMGSKYKGYVDSPHKIYAGNLDWGLTSQGLRDAFAEQPGLLSAKVIYERNRGKSRGYGFVTFETAKDVEAALNDMNGVEIQGRPLILNSAADKKPSSPLVIDENTGNNVHSLEMLLSVST 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi668g00004 301 Gene3D - 184 280 IPR012677 -
Gabi668g00004 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 273 IPR000504 GO:0003723
Gabi668g00004 301 MobiDBLite consensus disorder prediction 68 91 - -
Gabi668g00004 301 SUPERFAMILY RNA-binding domain, RBD 85 176 IPR035979 GO:0003676
Gabi668g00004 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
Gabi668g00004 301 SUPERFAMILY RNA-binding domain, RBD 192 278 IPR035979 GO:0003676
Gabi668g00004 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 167 IPR000504 GO:0003723
Gabi668g00004 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 266 IPR000504 GO:0003723
Gabi668g00004 301 CDD RRM2_NsCP33_like 196 271 - -
Gabi668g00004 301 PANTHER OS02G0815200 PROTEIN 41 275 - -
Gabi668g00004 301 SMART rrm1_1 196 269 IPR000504 GO:0003723
Gabi668g00004 301 SMART rrm1_1 97 170 IPR000504 GO:0003723
Gabi668g00004 301 Gene3D - 64 179 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi668g00004 Gabi-Chr668 12923 16561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi668g00004 98 298 Eukaryotic Initiation Factors Gene Family AT3G16380 28.856 2.25e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi668g00004 - - gmx:100814852 370.933