Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi668g00002 ATGAACGACTTGTTCTCCGGCTCCTTCTCCCGCTTCCGCAACAACGAGCAAATGACCGCGGCGACATCATCATCGCCGCCGTCTGACGGCGGCGTCGTGAACCTTGACAAATTCTTCGCGGAAGTTGAAACGGTGAAGGAGGAACTGAAGGAGCTTGAGCGTCTCCACGAGAGCCTGCGTGGGTCCCACGAGAAGAGCAAGACCCTTCACAGCGCCAAAGCCGTTAAGGATCTTCGGTCCCGCATGGACGCTGACGTGGCACTGGCCCTCAAGAAAGCCAAGCTCGTCAAGGTCCGGCTCGAGGCGCTCGACCGGTCCAACGAAGCAAGCCGGAACTTGCCAGGTGGAGGACCCGGTTCATCCTCGGACCGGACCAGGACCTCCGTTGTGAGCGGATTGAGGAAGAAGCTGAAGGATTCAATGGACAGCTTCAACAACCTCAGACAACAGATATCCTCCGAGTACAGAGAAACCGTACAACGTAGATACTATACTGTCACCGGAGAGAACCCTGATGATAAAACCATTGACCTCCTCATCTCAACTGGTGAAAGTGAAACTTTCTTACAGAAAGCCATCCAGCAGCAAGGTAGAGCTAGTGTAATGGACACCATCCAAGAGATTCAAGAGAGGCATGACACGGTGAAAGAGATAGAGAGAAATCTGAACGAGCTGCACCAAGTGTTCTTGGACATGGTTGTGTTGGTCCAAACCCAAGGTGAACAATTGGATGACATTGAGAGCCACGTGGCACGAGCCAATTCGTACGTGAGGGGTGGGGTCCAGCAGTTGCATATTGCTAGGAAGCACCAGAAGAATACCCGAAAGTGGACCTGCATTGCCATTATAATCCTGCTCATTATAATCTTGATTATAGTTCTTCCTATTGTTTTAAGGAAGTGA 903 0.5161 MNDLFSGSFSRFRNNEQMTAATSSSPPSDGGVVNLDKFFAEVETVKEELKELERLHESLRGSHEKSKTLHSAKAVKDLRSRMDADVALALKKAKLVKVRLEALDRSNEASRNLPGGGPGSSSDRTRTSVVSGLRKKLKDSMDSFNNLRQQISSEYRETVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRASVMDTIQEIQERHDTVKEIERNLNELHQVFLDMVVLVQTQGEQLDDIESHVARANSYVRGGVQQLHIARKHQKNTRKWTCIAIIILLIIILIIVLPIVLRK 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi668g00002 300 SMART SynN_4 30 156 IPR006011 GO:0016020
Gabi668g00002 300 CDD SynN 35 192 IPR006011 GO:0016020
Gabi668g00002 300 CDD SNARE_syntaxin1-like 204 264 - -
Gabi668g00002 300 Gene3D - 194 298 - -
Gabi668g00002 300 ProSitePatterns Syntaxin / epimorphin family signature. 211 250 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gabi668g00002 300 SMART tSNARE_6 200 267 IPR000727 -
Gabi668g00002 300 Coils Coil 35 62 - -
Gabi668g00002 300 Pfam SNARE domain 241 293 IPR000727 -
Gabi668g00002 300 Pfam Syntaxin 37 240 IPR006011 GO:0016020
Gabi668g00002 300 Gene3D - 33 165 - -
Gabi668g00002 300 MobiDBLite consensus disorder prediction 107 128 - -
Gabi668g00002 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 267 IPR000727 -
Gabi668g00002 300 FunFam Syntaxin 132 198 298 - -
Gabi668g00002 300 PANTHER SYNTAXIN 47 287 IPR045242 -
Gabi668g00002 300 MobiDBLite consensus disorder prediction 113 128 - -
Gabi668g00002 300 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 32 162 - -
Gabi668g00002 300 SUPERFAMILY t-snare proteins 34 260 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi668g00002 Gabi-Chr668 9159 11069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi668g00002 24 279 SNARE and Associated Proteins AT3G11820 74.609 4.09e-142 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi668g00002 K08486 - gmx:100793347 444.121