Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi668g00001 ATGAACGACTTGTTCTCCGGCTCCTTCTCCCGCTTCCGCAACAACGAGCAAGTCTCCCCGGACAACAACAACCACCACGTCATCCAGATGACCGCGGCGACATCATCATCGCCGCCGTCTGACGGCGGCGTCGTGAACCTTGACAAATTCTTCGCGGAAGTTGAAACGGTGAAGGAGGAACTGAAGGAGCTTGAGCGTCTCCACGAGAGCCTGCGTGGGTCCCACGAGAAGAGCAAGACCCTTCACAGCGCCAAAGCCGTTAAGGATCTTCGGTCCCGCATGGACGCTGACGTGGCACTGGCCCTCAAGAAAGCCAAGCTCGTCAAGGTCCGGCTCGAGGCGCTCGACCGGTCCAACGAAGCAAGCCGGAACTTGCCAGGTGGAGGACCCGGTTCATCCTCGGACCGGACCAGGACCTCCGTTGTGAGCGGATTGAGGAAGAAGCTGAAGGATTCAATGGACAGCTTCAACAACCTCAGACAACAGATATCCTCCGAGTACAGAGAAACCGTACAACGTAGATACTATACTGTCACCGGAGAGAACCCTGATGATAAAACCATTGACCTCCTCATCTCAACTGGTGAAAGTGAAACTTTCTTACAGAAAGCCATCCAGCAGCAAGGTAGAGCTAGTGTAATGGACACCATCCAAGAGATTCAAGAGAGGCATGACACGGTGAAAGAGATAGAGAGAAATCTGAACGAGCTGCACCAAGTGTTCTTGGACATGGTTGTGTTGGTCCAAACCCAAGGTGAACAATTGGATGACATTGAGAGCCACGTGGCACGAGCCAATTCGTACGTGAGGGGTGGGGTCCAGCAGTTGCATATTGCTAGGAAGCACCAGAAGAATACCCGAAAGTGGACCTGCATTGCCATTATAATCCTGCTCATTATAATCTTGATTATAGTTCTTCCTATTGTTTTAAGGAAGTGA 939 0.5186 MNDLFSGSFSRFRNNEQVSPDNNNHHVIQMTAATSSSPPSDGGVVNLDKFFAEVETVKEELKELERLHESLRGSHEKSKTLHSAKAVKDLRSRMDADVALALKKAKLVKVRLEALDRSNEASRNLPGGGPGSSSDRTRTSVVSGLRKKLKDSMDSFNNLRQQISSEYRETVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRASVMDTIQEIQERHDTVKEIERNLNELHQVFLDMVVLVQTQGEQLDDIESHVARANSYVRGGVQQLHIARKHQKNTRKWTCIAIIILLIIILIIVLPIVLRK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi668g00001 312 PANTHER SYNTAXIN 59 299 IPR045242 -
Gabi668g00001 312 SMART SynN_4 42 168 IPR006011 GO:0016020
Gabi668g00001 312 Pfam SNARE domain 253 305 IPR000727 -
Gabi668g00001 312 CDD SNARE_syntaxin1-like 216 276 - -
Gabi668g00001 312 CDD SynN 47 204 IPR006011 GO:0016020
Gabi668g00001 312 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 44 174 - -
Gabi668g00001 312 ProSitePatterns Syntaxin / epimorphin family signature. 223 262 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gabi668g00001 312 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 217 279 IPR000727 -
Gabi668g00001 312 SMART tSNARE_6 212 279 IPR000727 -
Gabi668g00001 312 Coils Coil 47 74 - -
Gabi668g00001 312 SUPERFAMILY t-snare proteins 46 272 IPR010989 GO:0016020|GO:0016192
Gabi668g00001 312 FunFam Syntaxin 132 210 310 - -
Gabi668g00001 312 Gene3D - 45 177 - -
Gabi668g00001 312 Gene3D - 206 310 - -
Gabi668g00001 312 MobiDBLite consensus disorder prediction 125 140 - -
Gabi668g00001 312 Pfam Syntaxin 49 252 IPR006011 GO:0016020
Gabi668g00001 312 MobiDBLite consensus disorder prediction 119 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi668g00001 Gabi-Chr668 9159 11069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi668g00001 36 291 SNARE and Associated Proteins AT3G11820 74.609 9.62e-142 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi668g00001 K08486 - gmx:100793347 462.611