Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi661g00003 ATGACAAATACTTTTCCCTTGATTGCTATGCTTGTTGTTTCCAAGCTACTATATTTCTTCTTTCACATTTCCTATGCATCTGATACCATTACCCAGTTTCAGTCACTTCCTGATAATGGCAGCACCTTGGTTTCTAAGGATGGAACCTTTGAGTTGGGCTACTTCAATCCTGGTAGTTCCTCGAACCGCTATGTTGGAATATGGTACAAAAACATCCCCGTTAGAACGGTTGTTTGGGTTGCCAACCGTGACAACCCTATCAAAGACAACTCGAGCAAGTTAATCATAAACAAAGAGGGAAACCTTGTGCTTTTAAGCAAGAATAAGACTTTACTGTGGTCAACAAACTCCACAACAGAGGCTCTGAGTCCCATTGTGCAGCTCTTGGAAACTGGAAATTTAGTACTTCGAGATGAGAAGGACAACAACAACGAACCAGGTTTTCTGTGGCAGAGCTTTGACCATCCTTGTGATACAATATTACCAGGGATGAAGATTGGTTGGGACCTAAAAACTGGTCTCAATCGGCGTCTTACTGCTTGGAAAAATTGGGATGACCCCTCTTCAGGAGACTTTACATTAGGTTTTACGCTTGGAAGCAATTCTGAATTGCTTATTTGCAAGGGATTGGCAGAGTACTACAGGACTGGCCTTGTGAATAGCCCAGTTGGAGTATTCGGATTGAGGGGTAATCCAATCTACACTAACAAATATGTTAGCAATGAAGATGAAGTGCTTTTCTCATACACACTCAAGAATAGTTCTGTGATTTCTATTATTGTTTTGAATCAAACCCTTCAACTTCGTCAACGCCTCGTATGGATTCCTGACACCAGAATTTGGAGAACTTACCAATCCTGGCCACAAGACAGTTGTGATATTTATAATACTTGCGGCCCAAATGGAAATTGTATCATTTCTGAAACGCGAATTTGCCAATGTTTACAAGGATTTGAGCCAAAATCACCCCAAGAATGGAATGCAATGGACTGGACACAAGGATGTGTGCGCCGCAATTCATGGAGATGCGGAGTCAAAAATAAAGATGGGTTTCAGAGATTTAGTAGAATGAAATTGCCAGATATTCCAAATTCTTGGGTTAATAAAAGTATGGTACTCGAAGATTGCAAGGCCAAATGCTTGGAAAACTGTTCCTGCACAGCTTATGCGAGCCCGGACACAAGTGGAGCAGGTATTGGTTGTTCCATGTGGTTTGGTGATCTCTTTGATTTGAGAATTTCAGAAGGTGGGCAAGATCTATATGTTCGAATGGCTGTTGTAGATATGGAGGCTAAACATGGGCGTCAGAAAAAGGTAGTCTTGGTGGTTACAATCACTGTTTCATTTGTCCTTGTGATTCTATTGGCATTCTCCTACATCTACGTGACCAAAATGAAGTACACAGCAGACAAAATCATGCCGACACGAGAGCAAGATGAACGCGGACAAGAAGATTTGGAGCTTCCTTTGTTTGATCTTGCCGCAATAATTCATGCTACCAATAACTTCTCAACCGACAATAAGCTCGGGGAAGGTGGTTTTGGGCCTGTATACAAGGGTACATTGCGAGATGGACAAGAGATTGCAGTCAAAAGGCTTTCAAGGAGTTCTGGACAAGGATTGAAAGAATTTAAGAATGAAGTGATGTTGTGTGCCAAACTTCAGCACCGAAATCTTGTTAAGGTTCTTGGTTGTTGCATTGAAGGAGATGAGAAAATGTTACTCTATGAGTACATGCCCAACAAAAGCCTCGATTCATTTCTTTTCGATTCAGCTCGAAGTAAACTTCTAGATTGGTCGAAGCGCTTTAACATCTTGTGTGCAATTGCTCGGGGGCTTCTTTATCTTCATCAAGATTCGAGATTAAGGATCATACACCGGGATCTAAAAGCAAGTAATATTTTACTAGACAATAATATGAACCCAAAAATTTCAGATTTCGGCATGGCCAAAATGTGTGGAGCTGATCAAATCGATGGGAATACAAACAGGATTGTTGGGACATACGGTTATATGGCACCTGAATATGCCATCGATGGATTTTTCTCTGTAAAATCGGATGTATTCAGCTTTGGCGTATTATTGCTAGAAATTGTAAGCGGAAAGAAAAATGGAGCACTTGCCTACGAGGCCGACGACCGTAATCTTATTGGGCATGCATGGAGATTGTGGACAGAGGGCACTGCAGAGCAATTGATTGATGCTTATTTGGTAGATTCATGTATTGTATCTGAAGCTTTAAGCTGCATTCAAATTGGTCTTTTATGTCTGCAACATCATCCTGATGATAGGCCGAACATGACATCTGTGGTTGTGATGTTGAGCAGTGAAAATGCTTTACCTCAACCAAAGGAACCTGGTTTCTTAATCAGAAAGGCTTCAATTCAAGGAGAACATTCTTCTTCAGGCAATGAAGTAACTATCTCACAACTAAATGCCAGATAG 2445 0.4115 MTNTFPLIAMLVVSKLLYFFFHISYASDTITQFQSLPDNGSTLVSKDGTFELGYFNPGSSSNRYVGIWYKNIPVRTVVWVANRDNPIKDNSSKLIINKEGNLVLLSKNKTLLWSTNSTTEALSPIVQLLETGNLVLRDEKDNNNEPGFLWQSFDHPCDTILPGMKIGWDLKTGLNRRLTAWKNWDDPSSGDFTLGFTLGSNSELLICKGLAEYYRTGLVNSPVGVFGLRGNPIYTNKYVSNEDEVLFSYTLKNSSVISIIVLNQTLQLRQRLVWIPDTRIWRTYQSWPQDSCDIYNTCGPNGNCIISETRICQCLQGFEPKSPQEWNAMDWTQGCVRRNSWRCGVKNKDGFQRFSRMKLPDIPNSWVNKSMVLEDCKAKCLENCSCTAYASPDTSGAGIGCSMWFGDLFDLRISEGGQDLYVRMAVVDMEAKHGRQKKVVLVVTITVSFVLVILLAFSYIYVTKMKYTADKIMPTREQDERGQEDLELPLFDLAAIIHATNNFSTDNKLGEGGFGPVYKGTLRDGQEIAVKRLSRSSGQGLKEFKNEVMLCAKLQHRNLVKVLGCCIEGDEKMLLYEYMPNKSLDSFLFDSARSKLLDWSKRFNILCAIARGLLYLHQDSRLRIIHRDLKASNILLDNNMNPKISDFGMAKMCGADQIDGNTNRIVGTYGYMAPEYAIDGFFSVKSDVFSFGVLLLEIVSGKKNGALAYEADDRNLIGHAWRLWTEGTAEQLIDAYLVDSCIVSEALSCIQIGLLCLQHHPDDRPNMTSVVVMLSSENALPQPKEPGFLIRKASIQGEHSSSGNEVTISQLNAR 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi661g00003 814 Gene3D Transferase(Phosphotransferase) domain 1 579 784 - -
Gabi661g00003 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 153 - -
Gabi661g00003 814 Pfam D-mannose binding lectin 76 182 IPR001480 -
Gabi661g00003 814 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 765 - -
Gabi661g00003 814 SUPERFAMILY Protein kinase-like (PK-like) 487 774 IPR011009 -
Gabi661g00003 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 578 - -
Gabi661g00003 814 Pfam Protein tyrosine and serine/threonine kinase 505 772 IPR001245 GO:0004672|GO:0006468
Gabi661g00003 814 CDD B_lectin 39 156 IPR001480 -
Gabi661g00003 814 PIRSF SRK 1 814 IPR024171 GO:0004674
Gabi661g00003 814 Gene3D - 21 153 IPR036426 -
Gabi661g00003 814 ProSiteProfiles Bulb-type lectin domain profile. 27 149 IPR001480 -
Gabi661g00003 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Gabi661g00003 814 Pfam Domain of unknown function (DUF3403) 775 814 IPR021820 GO:0004674
Gabi661g00003 814 SMART ntp_6 346 424 IPR003609 -
Gabi661g00003 814 CDD STKc_IRAK 509 774 - -
Gabi661g00003 814 Gene3D Phosphorylase Kinase; domain 1 465 578 - -
Gabi661g00003 814 SMART serkin_6 503 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi661g00003 814 ProSiteProfiles Protein kinase domain profile. 503 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi661g00003 814 Pfam S-locus glycoprotein domain 227 322 IPR000858 GO:0048544
Gabi661g00003 814 ProSiteProfiles PAN/Apple domain profile. 343 425 IPR003609 -
Gabi661g00003 814 CDD PAN_AP_plant 346 425 - -
Gabi661g00003 814 ProSiteProfiles EGF-like domain profile. 288 324 IPR000742 -
Gabi661g00003 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 782 - -
Gabi661g00003 814 SMART blect_4 34 156 IPR001480 -
Gabi661g00003 814 Pfam PAN-like domain 343 411 IPR003609 -
Gabi661g00003 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 187 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi661g00003 Gabi-Chr661 31511 41086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi661g00003 440 791 Receptor kinase-like Gene Family AT4G23230 56.620 6.03e-131 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi661g00003 PK_Tyr_Ser-Thr 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi661g00003 - - gmx:100790436 1206.05