Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi661g00002 ATGGTCATTCTTCCTGCTATGCTTGTTATTTCCAAGCTACTATTTTTCTTCTTTCATATTTCCTATGCGTTTGACACCATTACCCAGTTTAAGTCACTTCCTGATGATGGCAGCACCTTGGTTTCTAAGGATGGAACCTTTGAGTTGGGTTTCTTCAATCCTGGTAGTTCCTCAAACCGCTATGTTGGAATTTGGTACAAAAATGTCCAAGTTAGAACAGTTGTTTGGGTTGCCAACCGTGACAACCCTATCAAAGACGACTCCAGCAAGCTGATCGTAAGCAAAGAAGGAAACCTTGTGCTTCTCAGCCAGAATCAAACTCTTCTTTGGTCAACAAACTCCTCAACAGAGGCTTCAAGTCCAAGAGTGCAGCTCTTAGACACTGGAAATTTAGTACTTCGAGATGAGAAGGACAACAACAATGAAACAAGTTTTCTGTGGCAGAGCTTTGATCATCCTTGTGATACAGTATTGCCAGGAATGAAGATTGGATGGGACCTAAAAACTGGTCTTGATCGGCGTCTTACAGCTTGGAAAAATTGGGACGATCCATCTTCAGGAAACTTCACTGCTGGAATGGTGCTTGGTAGCAATCCTGGAATGGTAATATGGAAGGGTTCGGCAGAGTACTACAGAACTGGCCCTGTGAATGGCCCATTAGGAGTATTCGGATTAAAGGAAAATCCATTTTACAATAACATATATGTTGTCAATGAAGATGAAGTTTATTACTCATACACACTCAAGAATAGTTCTGTGATTTCCATAATTGTTTTGAACCAAACTCTTAATCTTCGTCAACGCCTCATATTGCTTCCTGAGACCGGAACATGGAAAGTTTACCAATCCTTGCCACAAGACAGTTGTGATATTTATAATACTTGTGGCCCAAATGGGAATTGCATCACTGCTGAAACTCCAATTTGCCAATGCTTAGAAGGATTCGATCCAAAATCACGCGAACAATGGAATGCAATGGACTGGACAGTAGGATGTGTGCGGCGCAATTCGTGGAGATGCGGTGTCAAAAATAAAGATGGGTTTCGGAGATTAAGTAGAATGAAATTGCCAGACATTCCAAATTCTTGGGTCAATAAAAGTATGGTACTCGAAGATTGCAAGGCCAAATGCTTGGAAAATTGTTCCTGCACAGCTTATGCGAGCATAGACACAAGTGGAGCAGGTATTGGTTGTTCGATCTGGTTCGGTGATCTTATTGATTTGAGAGTTTCAGAAGGTGGGCAAGATCTATATGTTCGAATGGCCGTTTCAGATATGGGTGAAGTTGGAAATGCAGAGAATAAACATGGGCGTCAGAGAAAGGTAGTCTTGGGGGTTACAATCACTTTTTCATTTGTCCTTGTGATGCTATTGGCATTCTCCTATATTTACATCACCAACACAAAGAATACAGAGGAAACGGACAAAATCATGCCGACAGAAGATAATGATAAATGTGGACAAGAAGATTTCGAGCTTCCATTATTTGATCTAGCTACAATAGTTAATGCAACCAATAACTTCTCAACTGAGTCCAAACTCGGGGAAGGTGGTTTTGGACCTGTATATAAGGGTACATTGCTAGATGGACAAGATATTGCAGTCAAAAGACTTTCAAGGTGTTCTGGACAAGGATTGACAGAATTTATGAATGAAGTTATATTGTGTGCAAAACTTCAGCACCGAAATCTTGTTAAGGTTCTTGGTTGTTGCGTTGAAGGAGAGGAGAAAATGCTTCTCTATGAATACATGCCCAATAAAAGCCTCGATTCATTTCTTTTTGATTCAGATCAAAGTAAACTTTTAGATTGGTCTAAGCGCTTCAACATCTTGAATGCAATTGCTAGAGGGCTTCTTTATCTACATCAAGATTCTAGATTAAGGATCATACACAGAGATCTAAAAGCGAGTAATATTTTATTAGACAATGATATGAATCCAAAAATTTCAGATTTCGGCATGGCAAGATTGTTTGGTGGTGATCAAATTGAAGGGAATACAAGAAGAATAGCGGGGACATTCGGTTATATGGCACCTGAATATGCCATTGATGGATTTTTCTCTATAAAATCGGATGTATTCAGCTTTGGCGTGTTAGTGCTAGAAATTTTAAGCGGAAAGAAAAACAGAGCACTTGCCTTCCAGGACAACGATTATAATCTTATTGGGCTTGCATGGAGATTATGGAAAGAGGGCTTTCCAGAGCAATTGATTGATAAGTGTTTGGGGGATTCGTGTATTATATCTGAAGCTTTACGCTGCATTCAAATTGGCCTTTTATGTCTGCAACATCACCCTGACGATAGGCCAAACATGACATCTGTGGTTATGATGTTGAGCGGTGAAAATGCTTTACCTCAACCGAAGGAACCTGCTTTCTTAATTAGAAAGGTCTCAATTGAAGGAGAACATTCTTCTTCCGTCAACGAAGTAACTGTCTCACTACTTAAACCTAGATAG 2460 0.3996 MVILPAMLVISKLLFFFFHISYAFDTITQFKSLPDDGSTLVSKDGTFELGFFNPGSSSNRYVGIWYKNVQVRTVVWVANRDNPIKDDSSKLIVSKEGNLVLLSQNQTLLWSTNSSTEASSPRVQLLDTGNLVLRDEKDNNNETSFLWQSFDHPCDTVLPGMKIGWDLKTGLDRRLTAWKNWDDPSSGNFTAGMVLGSNPGMVIWKGSAEYYRTGPVNGPLGVFGLKENPFYNNIYVVNEDEVYYSYTLKNSSVISIIVLNQTLNLRQRLILLPETGTWKVYQSLPQDSCDIYNTCGPNGNCITAETPICQCLEGFDPKSREQWNAMDWTVGCVRRNSWRCGVKNKDGFRRLSRMKLPDIPNSWVNKSMVLEDCKAKCLENCSCTAYASIDTSGAGIGCSIWFGDLIDLRVSEGGQDLYVRMAVSDMGEVGNAENKHGRQRKVVLGVTITFSFVLVMLLAFSYIYITNTKNTEETDKIMPTEDNDKCGQEDFELPLFDLATIVNATNNFSTESKLGEGGFGPVYKGTLLDGQDIAVKRLSRCSGQGLTEFMNEVILCAKLQHRNLVKVLGCCVEGEEKMLLYEYMPNKSLDSFLFDSDQSKLLDWSKRFNILNAIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGMARLFGGDQIEGNTRRIAGTFGYMAPEYAIDGFFSIKSDVFSFGVLVLEILSGKKNRALAFQDNDYNLIGLAWRLWKEGFPEQLIDKCLGDSCIISEALRCIQIGLLCLQHHPDDRPNMTSVVMMLSGENALPQPKEPAFLIRKVSIEGEHSSSVNEVTVSLLKPR 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi661g00002 819 Pfam Protein tyrosine and serine/threonine kinase 510 777 IPR001245 GO:0004672|GO:0006468
Gabi661g00002 819 Gene3D Phosphorylase Kinase; domain 1 468 583 - -
Gabi661g00002 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 184 IPR036426 -
Gabi661g00002 819 SMART serkin_6 508 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi661g00002 819 Pfam S-locus glycoprotein domain 211 319 IPR000858 GO:0048544
Gabi661g00002 819 Pfam PAN-like domain 340 408 IPR003609 -
Gabi661g00002 819 CDD PAN_AP_plant 343 422 - -
Gabi661g00002 819 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Gabi661g00002 819 SUPERFAMILY Protein kinase-like (PK-like) 493 797 IPR011009 -
Gabi661g00002 819 Gene3D Transferase(Phosphotransferase) domain 1 584 790 - -
Gabi661g00002 819 Pfam Domain of unknown function (DUF3403) 783 819 IPR021820 GO:0004674
Gabi661g00002 819 ProSiteProfiles PAN/Apple domain profile. 340 422 IPR003609 -
Gabi661g00002 819 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
Gabi661g00002 819 CDD STKc_IRAK 514 779 - -
Gabi661g00002 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Gabi661g00002 819 SMART ntp_6 343 421 IPR003609 -
Gabi661g00002 819 SMART blect_4 31 153 IPR001480 -
Gabi661g00002 819 CDD B_lectin 36 153 IPR001480 -
Gabi661g00002 819 PIRSF SRK 1 819 IPR024171 GO:0004674
Gabi661g00002 819 ProSiteProfiles Protein kinase domain profile. 508 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi661g00002 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 150 - -
Gabi661g00002 819 Pfam D-mannose binding lectin 73 179 IPR001480 -
Gabi661g00002 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 472 583 - -
Gabi661g00002 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 584 787 - -
Gabi661g00002 819 Gene3D - 19 150 IPR036426 -
Gabi661g00002 819 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi661g00002 Gabi-Chr661 5886 9354 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi661g00002 442 796 Receptor kinase-like Gene Family AT4G23230 53.652 4.16e-125 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi661g00002 PK_Tyr_Ser-Thr 6.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi661g00002 - - gmx:100790436 1185.63