Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi65g00006 ATGTACCTTAAAACCCACTCTCTGTTCCTCACCCTTTTCATCTCCACCATAATCATCAACACCGCCGCCGCCATCACACCAGGCTCCACCCTCTCGGCCTCCAACACCAACCAAACATGGTCCTCATCCAGCAGCACCTTCTCCCTCGGCTTTGTCGCCGTCCAGCCACCCACCTCCCCTCCTTCCTTCATTGCTGCCATCGTTTACTCCGGCGGCGCCCCCATCGTCTGGTCCGCCGGTAACGGCTCTGCCGTCGACTCCGGCGGGTCCTTCCAATTCCTGTCCTCCGGCGCTCTCCGCCTGGTCAACGGCTCTGGCTCCACCGTATGGGACTCCGGCGCTAATCCCGGCGCCACCTCCGCCACCCTGGAAGAAAGTGGCAACTTGGTCATCTCCAATGGCACCACAACCCTTTGGTCTAGCTTTGAAAACCCTACTGATACCCTCTTGCCTTCTCAGAATTTCAGTGTTGGTAAGGTTTTGAAATCTGGGTCTTACTCCTTTAGTCTTATCAAAAGTGGGAATTTGACCCTGAAGTGGAATGATAGCATATTGTTCTGGACTCAGGGTCTGAATTCTTCTGTTAATGTGAGTTTGAAATCTCCTGTTTTGGAGTTGCAATCTATTGGGCTTTTGCAGCTTTCTGATGCAAATTTGAGTACTCCTGCTGTTGTTGCTTATAGCAGTGACTATGCTGATAGTAATACTTTGAGGGTGTTGAAGTTAGATGATGATGGGAATTTGAGGATTTATAGCACTTTGACTGGTAGTGGAAACCCTACTGCTAGATGGTCTGCTGTTCAGGATCAGTGTGAGGTTTATGCTTACTGTGGGAACTATGGTATATGCAGTTATAATGATTCCAGCCCGGTTTGCGGGTGCCCATCTGAGAATTTTGATATGATTGACCCAAATGATAGTAGGAAAGGGTGTAGGAGGAAGGTGAGTCTTGACAGTTGTCAAGGGACTGCAACTATGTTGACATTGGATCATGCTCAGTTCTTGACTTACCCACCTGAGACTCAGTCACAGGTTTTTTTTAGTGGAATATCAGGATGTAGAGGAAATTGTCTTTCAGGATCATCTGCCTGTTTTGCTTCTACCTCGTTGTCAGATGGCACGGGACTATGTTACCAGAAAAGTGTAGATTTTGTCAGTGGATATCATAGTCCTGCATTACCTAGCACTTCTTTTGTCAAGGTTTGTCCGCCGCTTGTTCCAAATCCACCACCCTCTTCCGGGGAGACTGTGAAGCAAAAGAGTTCGAAGGTACCAGCTTGGGTTGTAGTGGTTGTCATTTTGGGTACCCTTCTATGTTTGGTTGCCTTGGAAGGTGGTTTGTGGATGTGGTGTTGTAGGAACAGCACAAGATTTGGTGGATTGTCTGCTCAGTATGCTCTTCTTGAGTATGCATCTGGTGCACCGGTTCAGTTCTCGTACAAGGAGCTTGAGCGCTCAACAAAGGGGTTCAAGGAGAAGCTTGGAGCTGGTGGATTTGGTGCTGTGTACAGAGGAATTCTTGTTAATAAAACTGTTGTTGCAGTGAAGCAACTTGAAGGCATTGAGCAAGGGGAGAAACAGTTTAGGATGGAAGTTGCTACTATAAGTAGCACTCATCATCTGAATTTGGTAAGGCTTATTGGCTTTTGCTCAGAAGGGCGCCACAGGCTTTTAGTTTATGAGTTCATGAAAAATGGGTCTCTGGATAATTTTTTATTCCAGACAGAAGAGCATTCAGGAAAATTGTTGAATTGGGAGTATCGGTACAACATCGCCCTGGGCACTGCAAAAGGGATCACATACCTTCATGAGGAGTGTCGTGACTGCATAGTCCATTGTGATATAAAACCTGAAAACATTCTCTTGGATGAGAATTACATTGCTAAAGTCTCTGATTTTGGTCTTGCAAAGCTCATTACCAAGGACCATAGGCATCGGACCTTGACTAGTGTGAGAGGAACTAGAGGATACTTAGCACCAGAGTGGCTTGCAAATCTTCAAATAACATCAAAATCCGATATTTACAGCTATGGCATGGTTTTGTTGGAGATTGTGAGTGGAAGGAGGAACTTTGAAGTCTCAGACGAAACAAATAGGAAGAAGTTCTCAATTTGGGCCTATGATGAGTTTGAGAAAGGTAATATCAATGGAATTTTGGACAAAAGACTAGCTGATCAAGAAGTTGATATGGAGCAAGTGAGAAGAATGCTTCAGGCAAGCTTTTGGTGCATCCAAGAACTACCATCTCAGAGACCACCAATGAGCAGAGTGGTACAAATGCTGGAAGGGGTTGCTGAGATTGAGAAGCCTCCTGCCCCAAAATCAGTGATGGAAGGACCTGTTAGTGGAACCAGCACATACCTGAGTAGCAATGCCAGTGCATTCTCCACAGTTGGAGCTTCACCCCACGGTCCCTCCTCATCATCATCATTCAAGACTAGCGGTGTTTCGACCTTCCCCTCAGGACGGAACACTGACAAGGCAACTTCATCCCTTCTACATGTACAATCAGAAACATGA 2520 0.4635 MYLKTHSLFLTLFISTIIINTAAAITPGSTLSASNTNQTWSSSSSTFSLGFVAVQPPTSPPSFIAAIVYSGGAPIVWSAGNGSAVDSGGSFQFLSSGALRLVNGSGSTVWDSGANPGATSATLEESGNLVISNGTTTLWSSFENPTDTLLPSQNFSVGKVLKSGSYSFSLIKSGNLTLKWNDSILFWTQGLNSSVNVSLKSPVLELQSIGLLQLSDANLSTPAVVAYSSDYADSNTLRVLKLDDDGNLRIYSTLTGSGNPTARWSAVQDQCEVYAYCGNYGICSYNDSSPVCGCPSENFDMIDPNDSRKGCRRKVSLDSCQGTATMLTLDHAQFLTYPPETQSQVFFSGISGCRGNCLSGSSACFASTSLSDGTGLCYQKSVDFVSGYHSPALPSTSFVKVCPPLVPNPPPSSGETVKQKSSKVPAWVVVVVILGTLLCLVALEGGLWMWCCRNSTRFGGLSAQYALLEYASGAPVQFSYKELERSTKGFKEKLGAGGFGAVYRGILVNKTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDNFLFQTEEHSGKLLNWEYRYNIALGTAKGITYLHEECRDCIVHCDIKPENILLDENYIAKVSDFGLAKLITKDHRHRTLTSVRGTRGYLAPEWLANLQITSKSDIYSYGMVLLEIVSGRRNFEVSDETNRKKFSIWAYDEFEKGNINGILDKRLADQEVDMEQVRRMLQASFWCIQELPSQRPPMSRVVQMLEGVAEIEKPPAPKSVMEGPVSGTSTYLSSNASAFSTVGASPHGPSSSSSFKTSGVSTFPSGRNTDKATSSLLHVQSET 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi65g00006 839 Gene3D - 17 144 IPR036426 -
Gabi65g00006 839 CDD STKc_IRAK 494 763 - -
Gabi65g00006 839 PIRSF SRK 1 814 IPR024171 GO:0004674
Gabi65g00006 839 ProSiteProfiles Bulb-type lectin domain profile. 22 144 IPR001480 -
Gabi65g00006 839 SMART blect_4 31 145 IPR001480 -
Gabi65g00006 839 Pfam S-locus glycoprotein domain 225 295 IPR000858 GO:0048544
Gabi65g00006 839 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 145 266 - -
Gabi65g00006 839 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 190 IPR036426 -
Gabi65g00006 839 PANTHER OS07G0415500 PROTEIN 8 773 - -
Gabi65g00006 839 Gene3D - 146 267 IPR036426 -
Gabi65g00006 839 SUPERFAMILY alpha-D-mannose-specific plant lectins 150 251 IPR036426 -
Gabi65g00006 839 MobiDBLite consensus disorder prediction 795 839 - -
Gabi65g00006 839 ProSiteProfiles Protein kinase domain profile. 488 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi65g00006 839 Gene3D Phosphorylase Kinase; domain 1 461 562 - -
Gabi65g00006 839 FunFam S-receptor-like serine/threonine-protein kinase 462 562 - -
Gabi65g00006 839 ProSitePatterns Protein kinases ATP-binding region signature. 494 516 IPR017441 GO:0005524
Gabi65g00006 839 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 144 - -
Gabi65g00006 839 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 563 771 - -
Gabi65g00006 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Gabi65g00006 839 SUPERFAMILY Protein kinase-like (PK-like) 471 762 IPR011009 -
Gabi65g00006 839 SMART serkin_6 488 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi65g00006 839 Pfam D-mannose binding lectin 75 162 IPR001480 -
Gabi65g00006 839 Gene3D Transferase(Phosphotransferase) domain 1 563 774 - -
Gabi65g00006 839 ProSiteProfiles Bulb-type lectin domain profile. 146 263 IPR001480 -
Gabi65g00006 839 Pfam Protein kinase domain 491 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi65g00006 Gabi-Chr65 109509 112418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi65g00006 461 771 Receptor kinase-like Gene Family AT5G20050 45.062 2.70e-82 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi65g00006 Pkinase 2.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi65g00006 - - gmx:100795819 1320.06