Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi655g00011 ATGATGCAATTAAGCTTATGCCTATTGTTTCTTATTCTTTTTGGTCCAGTCCTGCCAGTGCTCTCTGTGGACCCTGGTTTCAACGATGATGTGTTTGGGTTGATTGTGTTCAAAGCTGGTTTGGAAGACCCAAAGCATAAACTCTCTTCTTGGAATGAAGATGATAACAGTCCCTGCAATTGGGAAGGTGTTAAATGTGATCCTGCAACCAATAGGGTCTCTGCTCTTGTCCTTGATGGGTTCTCTCTTTCTGGGCATGTTGATAGAGGCCTATTGAGATTGCAGTTCCTTCAAATTCTCTCACTTTCTGGGAACAACTTCACAGGGCCCATAAACCCTGATCTTCCTCGCCTTGGGGGTTTGCAAGTTGTTGACTTGAGTGACAACAACCTCTCTGGGTCAATCCCAGAAGGGTTTTTCCAGCAATGTGGATCTCTAAGAACTGTTTCCTTTGCAAAGAATAACCTTACAGGTAAGATTCCTGATTCTTTGAGTTATTGCTCCACATTGGCAACTGTTAACTTCTCCTCTAATCAACTTGATGGGGAATTGCCATCTGTGGTGTGGTTCTTGAGGGGACTACAGTCACTTGATCTGTCAAATAACTTGCTTGAGGGAGAGATTCCTGAAGGAATTCAGAATCTGTATGATTTGAGGGAGTTGAGTCTACAGAATAACCACTTTACTGGTAGGCTTCCTGGGGATATTGGGGGCTGCTTACTTTTGAAATCACTTGATTTGAGTGATAATTTTCTCTCTGGAGAACTTCCTGAGTCAATGCAAAGACTCACTTCATGCACATCACTCAGATTGCAGGGTAATTCATTCACAGGAGGCATTCCTGATTGGATTGGACAACTGAAAAATCTAGAGATATTGGATCTTTCTGCAAATAGGTTTTCTGGTTGGATTCCAAAATCATTAGGAAATCTAGACTCACTGCATAGATTGAATTTATCCAGGAATCAGTTCACAGGAAACTTGCCTGGTTCAATGACAAATTGCACTAAGCTTTTGGCTCTTGACATCAGCCATAACAAGTTGGAAGGGCATCTTCCTTCATGGATTTTTAGGCTGGGTTTACAAAGTATCTCTCTTTCTGGGAACAGCTTCATTAAGGGAAATTATCCTTCACTTAAGTCCACATCTGCATCTTATCATGGTCTTGAGGTTTTGGATTTGTCCTCCAATGCATTTTCTGGTGAAATTCCGTCTGGGATTGAGGGTCTTAGTAGCCTGCAAGTGTTAAATATGTCCACCAACAATATCTCTGGTTCTATTCCTGTTGGTATAGGAGAACTTAAATCTTTATACATTATTGACTTAAGTGAGAACAAGCTTAATGGAAGCATTCCTATTGAAATAGAAGGGGCAATTTCACTCAGTGAACTGAGGCTACAAAAGAACTCCCTAGGTGGGAGAATTCCTGTTCAAATTGAGAAGTGTTCATCTCTAACATTTTTGATTCTTTCTCACAACAAGCTTACTGGTTCAATCCCTGCAGCCATTGTAAATCTAACCAATCTTCAGTATGTAGATTTGTCATGGAATGAACTCTCTGGAAGTTTACCCAAGGAGCTTGCAAATCTTTCCCATCTTTTCTCATTTATTGTATCCTATAACCACCTTCAAGGTGAGTTACCAGTGGGTGGCTTCTTCAACACCATTTCCCCCTCATCTGTCTCCGGTAATCCATTGTTGTGTGGTTCTATTGTCAACCACTCATGCCCTTCTGTTCATCCCAAACCTATTGTCTTAAATCCCAATTCTTCTGGTTCCAACTCCAGCATTTCCTCACAAAATCATCATCATAGGATCATACTCAGTATCTCTGCTCTTATTGCTATTGGAGCAGCTGCTTTTATTGCCATTGGTGTGGTGGCTATTACTGTCCTAAATATGCGTGTGCGTTCTTCAATGGCGCGTTCTGCTGCTCCATTTGCCTTCTCTGGTGGTGAGGACTACAGCTGTTCGCCAGCAAATGATCCAAACTATGGCAAGCTTGTCATGTTTGATGGTGATGCAGACTTTGCTGATGGAGCCCATAATCTTCTTAATAAAGAAAGTGAAATAGGTCGTGGTGGATTTGGAGTTGTTTATCGCACTTTCCTTCGAGATGGACATGCTGTTGCAATCAAGAAGCTTACAGTCTCAAGTTTGATCAAGTCCCAAGAAGACTTTGAGAGGGAAGTTAAAAAGCTTGGGAAGATAAGGCACCAGAATCTTGTAGCACTTGAAGGTTATTACTGGACTTCATCCTTGCAGCTTCTCATTTATGAGTATCTATCAAGAGGGAGTTTGCATAAGCTCCTACATGATGATAATAGCAAAAATGTCTTCTCTTGGGGTCAAAGGTTCAAGATTATTCTTGGCATGGCAAAAGGATTGGCCCATTTGCACCAAATGAACATAATCCACTATAATCTTAAATCAACCAATGTTCTGATTGATAGTTCTGGTGAGCCAAAAGTAGGAGATTTTGGCTTGGTGAAACTGTTACCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATACATGGCTCCTGAGTTTGCTTGCCGCACTGTTAAGATAACTGAGAAATGTGATGTATATGGTTTTGGGATCCTGGTTCTGGAGATAGTGACAGGAAAAAAACCTGTGGAATATATGGAGGATGATGTGGTTGTTCTCTGTGACATGGTGAGAGGTGCTTTGGAGGAAGGAACTGTGGAGCAATGTGTTGATGGTAGGTTACTTGGTAATTTTGCTGCTGAGGAAGCAATTCCTGTGATAAAGTTGGGGTTAATTTGTGCATCACAAGTGCCATCAAACCGTCCAGATATGGATGAAGTAGTCAACATATTAGAGTTAATCCAATGCCCTTCAGAAGGACAAGAAGAATTAGAATGA 2907 0.4128 MMQLSLCLLFLILFGPVLPVLSVDPGFNDDVFGLIVFKAGLEDPKHKLSSWNEDDNSPCNWEGVKCDPATNRVSALVLDGFSLSGHVDRGLLRLQFLQILSLSGNNFTGPINPDLPRLGGLQVVDLSDNNLSGSIPEGFFQQCGSLRTVSFAKNNLTGKIPDSLSYCSTLATVNFSSNQLDGELPSVVWFLRGLQSLDLSNNLLEGEIPEGIQNLYDLRELSLQNNHFTGRLPGDIGGCLLLKSLDLSDNFLSGELPESMQRLTSCTSLRLQGNSFTGGIPDWIGQLKNLEILDLSANRFSGWIPKSLGNLDSLHRLNLSRNQFTGNLPGSMTNCTKLLALDISHNKLEGHLPSWIFRLGLQSISLSGNSFIKGNYPSLKSTSASYHGLEVLDLSSNAFSGEIPSGIEGLSSLQVLNMSTNNISGSIPVGIGELKSLYIIDLSENKLNGSIPIEIEGAISLSELRLQKNSLGGRIPVQIEKCSSLTFLILSHNKLTGSIPAAIVNLTNLQYVDLSWNELSGSLPKELANLSHLFSFIVSYNHLQGELPVGGFFNTISPSSVSGNPLLCGSIVNHSCPSVHPKPIVLNPNSSGSNSSISSQNHHHRIILSISALIAIGAAAFIAIGVVAITVLNMRVRSSMARSAAPFAFSGGEDYSCSPANDPNYGKLVMFDGDADFADGAHNLLNKESEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQEDFEREVKKLGKIRHQNLVALEGYYWTSSLQLLIYEYLSRGSLHKLLHDDNSKNVFSWGQRFKIILGMAKGLAHLHQMNIIHYNLKSTNVLIDSSGEPKVGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILVLEIVTGKKPVEYMEDDVVVLCDMVRGALEEGTVEQCVDGRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMDEVVNILELIQCPSEGQEELE 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi655g00011 968 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 307 580 - -
Gabi655g00011 968 Pfam Leucine rich repeat 267 324 IPR001611 GO:0005515
Gabi655g00011 968 Pfam Leucine rich repeat 484 543 IPR001611 GO:0005515
Gabi655g00011 968 SMART LRR_typ_2 506 529 IPR003591 -
Gabi655g00011 968 SMART LRR_typ_2 118 142 IPR003591 -
Gabi655g00011 968 SMART LRR_typ_2 191 214 IPR003591 -
Gabi655g00011 968 SMART LRR_typ_2 410 434 IPR003591 -
Gabi655g00011 968 SMART LRR_typ_2 336 359 IPR003591 -
Gabi655g00011 968 SMART LRR_typ_2 287 310 IPR003591 -
Gabi655g00011 968 SMART LRR_typ_2 215 239 IPR003591 -
Gabi655g00011 968 SMART LRR_typ_2 311 335 IPR003591 -
Gabi655g00011 968 SMART LRR_typ_2 530 554 IPR003591 -
Gabi655g00011 968 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 762 963 - -
Gabi655g00011 968 Gene3D Ribonuclease Inhibitor 306 582 IPR032675 -
Gabi655g00011 968 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 34 954 - -
Gabi655g00011 968 Pfam Leucine Rich Repeat 194 215 IPR001611 GO:0005515
Gabi655g00011 968 Pfam Leucine Rich Repeat 242 262 IPR001611 GO:0005515
Gabi655g00011 968 ProSiteProfiles Protein kinase domain profile. 685 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi655g00011 968 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 679 761 - -
Gabi655g00011 968 Gene3D Ribonuclease Inhibitor 28 305 IPR032675 -
Gabi655g00011 968 Gene3D Transferase(Phosphotransferase) domain 1 762 966 - -
Gabi655g00011 968 Gene3D Phosphorylase Kinase; domain 1 676 761 - -
Gabi655g00011 968 SUPERFAMILY L domain-like 289 560 - -
Gabi655g00011 968 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 28 306 - -
Gabi655g00011 968 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Gabi655g00011 968 CDD STKc_IRAK 691 957 - -
Gabi655g00011 968 SMART LRR_sd22_2 191 214 - -
Gabi655g00011 968 SMART LRR_sd22_2 386 412 - -
Gabi655g00011 968 SMART LRR_sd22_2 434 457 - -
Gabi655g00011 968 SMART LRR_sd22_2 287 313 - -
Gabi655g00011 968 SMART LRR_sd22_2 506 532 - -
Gabi655g00011 968 Pfam Protein kinase domain 686 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi655g00011 968 SUPERFAMILY L domain-like 46 374 - -
Gabi655g00011 968 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Gabi655g00011 968 SUPERFAMILY Protein kinase-like (PK-like) 686 958 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi655g00011 Gabi-Chr655 91332 94593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi655g00011 1 965 Receptor kinase-like Gene Family AT5G01890 62.346 0.0 1146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Gabi655g00011 Pkinase 3.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi655g00011 - - gmx:100790365 1671.37