Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi655g00001 ATGAGTTCTGATCAGCCACTGCTTTCGGAACCAGATCTTCCAAGAGTGATTCATCACCGCCATCGGAAATCAGGATCCAGAGGCTGTATCTGCGGCAATGCTTCATTCTCATCTTCCGTCTTTGACGATGCTCTATCTCAGATCAGCGACTTTGACGTGAAGGACAGAGACCGTAACGTTGTGTTGGCTAGAGACTGTAGTTTCCACTCTGCATTTGGTAATAGCTCCTCCTCTTTCTCAGCTGATAGGGACTTCCACTCTTCTGAATCGGGGCAGTTTCCTTTGGAATGCCCCACACGCTTGGTATCATCAAGGGGTGCAATGGAACAACTGCGTGATGCAAATAGCCGTAGTGTGCCCTTTGAAATATCTGCAACTGGAACTGGAACTGGAACTGGAACTTCATCTAGAGTGCATGACAGGTTGAATAAATCTCAGAGGATTCGTCACAAAAGTGTGCATTTTGATGATGTTGCTTTACATGAAGATAGTGCTAGGCTTATCTATATCAATGATCCCAAGAAGACAAATGACAAGTATGAGTTCACTGGGAATGAGATCCGAACTAGTAAATACACCATTGTCACCTTCTTGCCCAAGAATCTCTTTATTCAGTTTCATCGGGTTGCTTATTTGTATTTCCTTGCCATCGCCTTTCTCAATCAGCTTCCTCCCCTGGCTGTGTTTGGGAGAACAGTGTCTCTTTTCCCCCTCTTGTTCGTGCTTTGCGTCACCGCTATTAAGGATGGTTATGAGGATTGGCGGAGGCACAGGTCGGACCGTAATGAAAACAACCGAGAGTCTCTGGTTCTTCAATCCGGGGATTTCCGATCGAAGAAGTGGAAAAAAATACAGGCTGGTGAGATTGTTAAGATCTTTGCCGATGAGACAATCCCAGCTGACATGGTCTTGTTGGGGACAAGTGATCAAAGTGGGCTTGCTTATATTCAGACAATGAATTTGGATGGAGAATCGAATTTGAAGACAAGGTATGCCAAGCAGGAAACAGCTTCAGCAGTTTCATCAGAAACTTGTGCTGTTTTTGGGGTTATTAGATGCGAGCAACCTAACCGGAATATTTATGAGTTCACGGCCAACATGGAGTTCAATGGAGTTAAGTGTTCCCTTAGCCAGTCAAACATTGTTCTGCGTGGTTGCCAACTGAAGAACACGGATTGGATAATTGGTGTTGTAGTTTATGCGGGACAGGAAACAAAAGCAATGATGAACAGTGCAGCTTCTCCTTCCAAGAGAAGCAGATTGGAAAGTTACATGAACAGAGAAACCCTTTGGTTGTCAGTTTTTCTTTTTATTATGTGTTTGGTCGTGGCCCTTGGGATGGGTCTTTGGCTGGTACGCCACAAGAACCAGCTTGATACCTTGCCTTACTACAGAAAAAGTTACTTCAACAATGGGCCAGATAATGGAAACAAATACAAGTATTATGGGATACCGATGGAAGTGTTTTTCTCCTTTTTGAGTTCTGTTATTGTGTTTCAGATAATGATACCGATATCTCTTTACATCACAATGGAGTTGGTTCGTTTGGGTCAGTCATACTTCATGATTGAAGACTTGGATATGTATGATGCTAGGTCTGGATCAAGGTTTCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGCTATGTATTTTCGGACAAGACAGGAACACTAACAGAAAACAAAATGGAATTTCGGAGGGCTAGTGTATATGGGAAGAATTATGGGACCTCATTGCTTATGGCTAATAATAATACAGCAGCAGCAGCAACTGTTATTCCTAAACGGAGATGGAAGCTCAAATCTGAAATCGCAGTTGATTCTGAATTGATGACAGTGTTGCAGAAAGACTCAAATAGAGATGAAAGGATTGCTGTTCACGAGTTTTTTCTTACGTTGGCTGCTTGTAATACTGTGATCCCTATACCTAGTGATGGTAGATTTTCCAGTTGTGGAACAAGTGAATCAATTGAAGATATAAAACATATTGACTACCAGGGAGAATCTCCTGATGAGCAAGCTCTAGTTTCTGCTGCCTCTGCATATGGATATACTCTTTTTGAGCGAACATCCGGACATATTGTTATTGATGTCAACGGTGAGAAACTCAGATTGGACGTATTGGGCCTGCATGAGTTTGATAGTGTGCGAAAGAGAATGTCTGTTGTTATTCGGTTTCCCGACAATGTTGTAAAGGTGTTAGTCAAAGGTGCTGATTCTTCAATGTTTAGCATTTTAGCAAATGGCAGTGAGAGCAACGATAGCATACTACATGCAACTCAGAGCCATTTGAGTGAATATTCTTCCGAAGGTTTGCGCACTCTTGTAGTTGCCTCCAGGGATCTTTCAGATGCTGAACTTGAGGAGTGGCAAAGTAGGTATGAAGAGGCAAGCACTTCATTGACTGACAGAGCTACTAAATTGCGTCAAACAGCAGCTCTTATAGAATGCAATTTAAAGCTACTTGGAGCAACTGGAATTGAGGACAAGCTCCAAGATGGTGTACCAGAAGCCATTGAGTCCCTGCGGCAAGCTGGAATTAAGGTCTGGGTTCTTACAGGTGATAAGCAAGAGACTGCAATTTCTATTGGTCTTTCCTGCAAACTTCTCAGTGCAGATATGCAACGGATTATTATAAATGGCACTTCAGAGACTGAATGCAGAAATCTTTTGGGTGATGCTAAAGCCAAATATTGTGTGACATCTTCAAGTAGAGGGCATCAGAATCTGAAGCACAAAAGCAATGCTGCACATTGTAATCTTGATATTCCCAATGGCTCAAAGTCATTGAGTTTGCCCAAGTGGAATCCAGGAAAGGAAGAAGAAATTAATGCTCCATTGGCACTCATAATTGATGGAAACAGTTTGGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTTTTCGACCTTGCAACTTCCTGTAGGGTAGTGCTATGTTGTCGTGTTGCACCCTTGCAGAAGGCAGGAATTGTTGATTTGATAAAGAGCCGCACGGATGATATGACACTGGCCATAGGTGATGGGGCCAATGACGTGTCAATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGGCGTCAAGCAGTGATGGCATCAGATTTTGCTATGGGGCAATTTCAGTTCTTGAAAAAATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGTAATGCTGTCTTTGTATTGATGTTATTCTGGTATATATTATGCACGGCTTTTTCTACAACTTCGGCATTGACGGATTGGAGTAGTGTATTCTATTCTGTGTTATACACATCTGTACCTACTATTATTGTTGGTATTCTGGACAAAGACTTGAGTCATAGGACACTCTTGCAGTATCCTAAATTGTATGGTACAGGTCACAGGCAAGAAGCATACAATATGCAATTATTTTGGATCACAATGATTGATACAGTATGGCAGAGCATTGTTCTCTTTTACACACCGTTGTTCACCTATAAGGACAGCTCAATTGATATATGGAGCATGGGCAGTTTGTGGACAATTGCAGTTGTTATCCTTGTAAATATACACCTGGCTATGGACATCAACCGTTGGGTATTAATTACTCATGTTGCTGTATGGGGATCAATAATCATTACATACGGTTGCATGGTGGTATTGGATTCTATACCTGTATTTCCCAATTACTGGACTATTTATCATTTGGCAAGGTCCCCTACATATTGGATTACAATTTTGCTTATAATAATCGTGGCATTGCTTCCTCGCTTTACTTGCAAAGTTGTTTGTCAAATCTTTTGGCCTTCTGATATCCAGATAGCTAGAGAAGCTGAGTTGGTGAGAAAAGGACATGATCATTTGCAGTCAAGGCAACAAGTTTCCAGTTAA 3915 0.4174 MSSDQPLLSEPDLPRVIHHRHRKSGSRGCICGNASFSSSVFDDALSQISDFDVKDRDRNVVLARDCSFHSAFGNSSSSFSADRDFHSSESGQFPLECPTRLVSSRGAMEQLRDANSRSVPFEISATGTGTGTGTSSRVHDRLNKSQRIRHKSVHFDDVALHEDSARLIYINDPKKTNDKYEFTGNEIRTSKYTIVTFLPKNLFIQFHRVAYLYFLAIAFLNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRESLVLQSGDFRSKKWKKIQAGEIVKIFADETIPADMVLLGTSDQSGLAYIQTMNLDGESNLKTRYAKQETASAVSSETCAVFGVIRCEQPNRNIYEFTANMEFNGVKCSLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMMNSAASPSKRSRLESYMNRETLWLSVFLFIMCLVVALGMGLWLVRHKNQLDTLPYYRKSYFNNGPDNGNKYKYYGIPMEVFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDLDMYDARSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFRRASVYGKNYGTSLLMANNNTAAAATVIPKRRWKLKSEIAVDSELMTVLQKDSNRDERIAVHEFFLTLAACNTVIPIPSDGRFSSCGTSESIEDIKHIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNVVKVLVKGADSSMFSILANGSESNDSILHATQSHLSEYSSEGLRTLVVASRDLSDAELEEWQSRYEEASTSLTDRATKLRQTAALIECNLKLLGATGIEDKLQDGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLSADMQRIIINGTSETECRNLLGDAKAKYCVTSSSRGHQNLKHKSNAAHCNLDIPNGSKSLSLPKWNPGKEEEINAPLALIIDGNSLVYILEKELESELFDLATSCRVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKKLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVLYTSVPTIIVGILDKDLSHRTLLQYPKLYGTGHRQEAYNMQLFWITMIDTVWQSIVLFYTPLFTYKDSSIDIWSMGSLWTIAVVILVNIHLAMDINRWVLITHVAVWGSIIITYGCMVVLDSIPVFPNYWTIYHLARSPTYWITILLIIIVALLPRFTCKVVCQIFWPSDIQIAREAELVRKGHDHLQSRQQVSS 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi655g00001 1304 SUPERFAMILY Calcium ATPase, transmembrane domain M 182 1277 IPR023298 -
Gabi655g00001 1304 SFLD p-type atpase 539 1061 IPR044492 -
Gabi655g00001 1304 Gene3D - 669 804 IPR023299 GO:0000166
Gabi655g00001 1304 SUPERFAMILY Calcium ATPase, transduction domain A 265 408 IPR008250 -
Gabi655g00001 1304 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 561 839 IPR023299 GO:0000166
Gabi655g00001 1304 NCBIfam HAD-IC family P-type ATPase 980 1096 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi655g00001 1304 NCBIfam HAD-IC family P-type ATPase 819 874 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi655g00001 1304 Gene3D - 822 1050 IPR023214 -
Gabi655g00001 1304 FunFam Phospholipid-transporting ATPase 668 803 - -
Gabi655g00001 1304 FunFam Phospholipid-transporting ATPase 822 1050 - -
Gabi655g00001 1304 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 157 1288 - -
Gabi655g00001 1304 NCBIfam phospholipid-translocating P-type ATPase 182 1285 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Gabi655g00001 1304 CDD P-type_ATPase_APLT_Dnf-like 184 1170 - -
Gabi655g00001 1304 Pfam Phospholipid-translocating ATPase N-terminal 168 233 IPR032631 -
Gabi655g00001 1304 Pfam E1-E2 ATPase 266 513 - -
Gabi655g00001 1304 SUPERFAMILY HAD-like 542 1054 IPR036412 -
Gabi655g00001 1304 Pfam Phospholipid-translocating P-type ATPase C-terminal 1038 1278 IPR032630 -
Gabi655g00001 1304 ProSitePatterns E1-E2 ATPases phosphorylation site. 557 563 IPR018303 -
Gabi655g00001 1304 SFLD Haloacid Dehalogenase 539 1061 - -
Gabi655g00001 1304 Gene3D - 241 412 - -
Gabi655g00001 1304 Pfam Cation transport ATPase (P-type) 672 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi655g00001 Gabi-Chr655 21602 29775 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi655g00001 145 1287 Primary Pumps ATPases AT5G04930 56.696 0.0 1328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi655g00001 K14802 - gmx:100812459 2175.98