Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi653g00017 ATGGGACGATCACCATGCTGTGACAAGGTTGGTTTGAAAAAAGGACCATGGACCCCTGAAGAAGATCAAAAGCTCTTAGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCTGCAAAAGCTGGACTTCAGAGGTGTGGCAAAAGCTGCAGACTTAGATGGACCAATTATCTTAGGCCTGATATTAAGAGAGGAAAGTTCAGTTTGCAAGAAGAACAAACCATCATTCAACTCCATGCCCTCTTAGGGAACAGGTGGTCGGCAATAGCTACACACTTGCCTAAGAGAACGGATAACGAGATAAAGAACTATTGGAACACACATCTTAAGAAAAGGTTAACCAAAATGGGGATTGATCCAGTGACTCACAAGCCTAAGAATGACGCACTTCTCTCTAGTGAAGGTCAATCAAAAACTGCTGCAAACCTTAGCCACATGGCTCAATGGGAAAGTGCTCGTCTTGAAGCTGAAGCAAGACTTGTTAGGGAATCAAAACTACGCTCACATTCACTACAACATCATCATCATCATCATCATCAACTTGGAAATTCTTCTGCTTTTGCATCTTCATCTTCTGCTTCAACTTCAGCTCCAATTCTGAACAATAATAATAATAAACAAGAGGCATCATCATCATCACATGTAGCCTTGCGTTCCCTTGATGTTCTTAAGGCTTGGAATGGAGGGTGGTTGAAATCTAATGAAGGAAATGGTGGCATTGCAAGTAATGACCTTGAGTCACCTACTTCTACCCTTTCTTTCTCCGAGAATAATGCACCACCAATTATGACTAGTGGATCAATTGGAGTAGGAGGAGGAGGAGGAGAAAATGCTGTGCCTATGATTGAGTTTGTGGGAACTTCAGGTTCCAATTCTGATGCAGGTGTTGTGAAAGAAGAAGGTGATCAACAAGAGTGGAAAGGTTATGAAAGTTCAACTCATTTGCAATTAGAATACAAAGATCATGGTATGGAAAATTCAATGAATTTTAGTTCTGGTTTGCATGAGTTGACAATGTCCATGGAAGGAACATGGGGTTCTGAGTCTCTTAGGACTAGTGGTTCACATGGAGATCCCATTGCTGAAGAAGGGTTTACTAATCTTCTGCTTAAAACAAACTCCGGTGACCAGAGGAGTTTGTCGGAGGGTGGAGGAGAGTCTAATAACGGTGGTGATGGTAGTGGCAGTGGTAGTGGTGATGGTAGTGGAAGTGATTTCTATGAAGATAACAATAACTACTGGAACAGCATTCTTAATTTAGTGAATTCTTCACCTTCTGATTCCCCTATGTTCTGA 1305 0.4192 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSEGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHSLQHHHHHHHQLGNSSAFASSSSASTSAPILNNNNNKQEASSSSHVALRSLDVLKAWNGGWLKSNEGNGGIASNDLESPTSTLSFSENNAPPIMTSGSIGVGGGGGENAVPMIEFVGTSGSNSDAGVVKEEGDQQEWKGYESSTHLQLEYKDHGMENSMNFSSGLHELTMSMEGTWGSESLRTSGSHGDPIAEEGFTNLLLKTNSGDQRSLSEGGGESNNGGDGSGSGSGDGSGSDFYEDNNNYWNSILNLVNSSPSDSPMF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi653g00017 434 Gene3D - 13 66 - -
Gabi653g00017 434 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi653g00017 434 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi653g00017 434 CDD SANT 69 112 IPR001005 -
Gabi653g00017 434 MobiDBLite consensus disorder prediction 132 147 - -
Gabi653g00017 434 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi653g00017 434 CDD SANT 16 61 IPR001005 -
Gabi653g00017 434 MobiDBLite consensus disorder prediction 168 215 - -
Gabi653g00017 434 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 210 - -
Gabi653g00017 434 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi653g00017 434 SMART sant 66 114 IPR001005 -
Gabi653g00017 434 SMART sant 13 63 IPR001005 -
Gabi653g00017 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi653g00017 434 MobiDBLite consensus disorder prediction 122 147 - -
Gabi653g00017 434 FunFam MYB-related transcription factor 13 66 - -
Gabi653g00017 434 MobiDBLite consensus disorder prediction 244 263 - -
Gabi653g00017 434 MobiDBLite consensus disorder prediction 374 410 - -
Gabi653g00017 434 Gene3D - 69 116 - -
Gabi653g00017 434 FunFam MYB transcription factor 69 116 - -
Gabi653g00017 434 MobiDBLite consensus disorder prediction 185 215 - -
Gabi653g00017 434 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi653g00017 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi653g00017 Gabi-Chr653 134454 137074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi653g00017 1 434 MYB Transcription Factor Family AT3G01140 53.440 5.09e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi653g00017 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi653g00017 K09422 - gmx:100101835 575.859