Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi653g00006 ATGATCTCATATGTTAATGGTTATGGAAGCAATGGGGGTTGGACTAATAATGCACATGCCACCTTCTATGGTGGTGGGGCTTGTGGGTATGGAAACTTGTATAGTCAAGGTTATGGGACTGATACAGCAGCACTTAGCACTGCCTTATTCAACAATGGCTTGAGCTGTGGTGCATGTTATGAAATTAAATGTGCAAATGACCCACAATGGTGCCTCCCTGGCTCCATTGTTGTCACTGCCACTAATTTCTGTCCACCTGGTGGTTGGTGTGATCCTCCCAATCACCATTTTGATCTTTCTCAACCTGTTTTTCAGCAAATTGCTCAATATAAAGCTGGTATTGTTCCTGTAGTTTACAGAAGGGTAAGGTGCAGAAGAAGAGGTGGAATCAGATTCACTATCAATGGTCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGAGCAGGTGATGTGCATTCTGTAGGCATCAAAGGTTCAAGAACTAGATGGCAAGCTATGTCAAGGAATTGGGGCCAAAATTGGCAGAGTAACTCCTACCTAAATGGACAAAGCCTTTCCTTTTTAGTCACCACCAGTAATGGTCACAGTGTGGTCTCATATAATGTTGCCCCAGCTAGTTGGTCCTTTGGACAGACCTACACTGGAAGGCAGTTCCACTACTAA 672 0.4345 MISYVNGYGSNGGWTNNAHATFYGGGACGYGNLYSQGYGTDTAALSTALFNNGLSCGACYEIKCANDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVGIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSNGHSVVSYNVAPASWSFGQTYTGRQFHY 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi653g00006 223 FunFam Expansin 129 221 - -
Gabi653g00006 223 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 139 218 IPR007117 -
Gabi653g00006 223 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 25 129 IPR007112 -
Gabi653g00006 223 SUPERFAMILY Barwin-like endoglucanases 15 147 IPR036908 -
Gabi653g00006 223 PANTHER EXPANSIN-A15 10 221 IPR002963 GO:0009664
Gabi653g00006 223 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Gabi653g00006 223 PRINTS Expansin signature 64 75 IPR002963 GO:0009664
Gabi653g00006 223 PRINTS Expansin signature 87 104 IPR002963 GO:0009664
Gabi653g00006 223 PRINTS Expansin signature 37 51 IPR002963 GO:0009664
Gabi653g00006 223 PRINTS Expansin signature 140 161 IPR002963 GO:0009664
Gabi653g00006 223 PRINTS Expansin signature 104 117 IPR002963 GO:0009664
Gabi653g00006 223 PRINTS Expansin signature 128 140 IPR002963 GO:0009664
Gabi653g00006 223 PRINTS Expansin signature 204 220 IPR002963 GO:0009664
Gabi653g00006 223 PRINTS Expansin signature 76 86 IPR002963 GO:0009664
Gabi653g00006 223 SMART dpbb_1 42 119 IPR007112 -
Gabi653g00006 223 Pfam Expansin C-terminal domain 130 207 IPR007117 -
Gabi653g00006 223 SUPERFAMILY PHL pollen allergen 126 218 IPR036749 -
Gabi653g00006 223 Pfam Lytic transglycolase 42 119 IPR009009 -
Gabi653g00006 223 CDD DPBB_EXPA_N 13 114 - -
Gabi653g00006 223 Gene3D - 4 125 IPR036908 -
Gabi653g00006 223 PRINTS Expansin/Lol pI family signature 112 128 IPR007118 GO:0005576
Gabi653g00006 223 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Gabi653g00006 223 PRINTS Expansin/Lol pI family signature 24 42 IPR007118 GO:0005576
Gabi653g00006 223 PRINTS Expansin/Lol pI family signature 166 180 IPR007118 GO:0005576
Gabi653g00006 223 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Gabi653g00006 223 Gene3D - 129 221 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi653g00006 Gabi-Chr653 26891 27961 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi653g00006 1 222 Expansin Gene Family AT2G03090 76.471 6.26e-129 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi653g00006 K20628 - gmx:100791784 419.083