Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi653g00004 ATGGCTCATTTTGGCTTTCTTATTCTGGGGTTTATCTCCATGATCTCATATGTTAATGGTTATGGAAGCAATGGGGGTTGGACTAATAATGCACATGCCACCTTCTATGGTGGTAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGAAACTTGTATAGTCAAGGTTATGGGACTGATACAGCAGCACTTAGCACTGCCTTATTCAACAATGGCTTGAGCTGTGGTGCATGTTATGAAATTAAATGTGCAAATGACCCACAATGGTGCCTCCCTGGCTCCATTGTTGTCACTGCCACTAATTTCTGTCCACCTGGTGGTTGGTGTGATCCTCCCAATCACCATTTTGATCTTTCTCAACCTGTTTTTCAGCAAATTGCTCAATATAAAGCTGGTATTGTTCCTGTAGTTTACAGAAGGGTAAGGTGCAGAAGAAGAGGTGGAATCAGATTCACTATCAATGGTCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGAGCAGGTGATGTGCATTCTGTAGGCATCAAAGGTTCAAGAACTAGATGGCAAGCTATGTCAAGGAATTGGGGCCAAAATTGGCAGACTAGTTGGTCCTTTGGACAGACCTACACTGGAAGGCAGTTCCACTACTAA 648 0.4352 MAHFGFLILGFISMISYVNGYGSNGGWTNNAHATFYGGSDASGTMGGACGYGNLYSQGYGTDTAALSTALFNNGLSCGACYEIKCANDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVGIKGSRTRWQAMSRNWGQNWQTSWSFGQTYTGRQFHY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi653g00004 215 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Gabi653g00004 215 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Gabi653g00004 215 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Gabi653g00004 215 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Gabi653g00004 215 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Gabi653g00004 215 SUPERFAMILY Barwin-like endoglucanases 27 168 IPR036908 -
Gabi653g00004 215 Gene3D - 16 145 IPR036908 -
Gabi653g00004 215 SUPERFAMILY PHL pollen allergen 147 209 IPR036749 -
Gabi653g00004 215 Pfam Expansin C-terminal domain 151 201 IPR007117 -
Gabi653g00004 215 Gene3D - 146 210 IPR036749 -
Gabi653g00004 215 SMART dpbb_1 63 140 IPR007112 -
Gabi653g00004 215 Pfam Lytic transglycolase 63 140 IPR009009 -
Gabi653g00004 215 PANTHER EXPANSIN-A15 19 205 IPR002963 GO:0009664
Gabi653g00004 215 CDD DPBB_EXPA_N 26 135 - -
Gabi653g00004 215 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 215 IPR007117 -
Gabi653g00004 215 FunFam Expansin 16 146 - -
Gabi653g00004 215 PRINTS Expansin signature 149 161 IPR002963 GO:0009664
Gabi653g00004 215 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Gabi653g00004 215 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Gabi653g00004 215 PRINTS Expansin signature 161 182 IPR002963 GO:0009664
Gabi653g00004 215 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Gabi653g00004 215 PRINTS Expansin signature 125 138 IPR002963 GO:0009664
Gabi653g00004 215 PRINTS Expansin signature 108 125 IPR002963 GO:0009664
Gabi653g00004 215 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi653g00004 Gabi-Chr653 26891 27963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi653g00004 1 209 Expansin Gene Family AT1G69530 78.440 4.73e-119 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi653g00004 K20628 - gmx:100799370 391.349