Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi652g00005 ATGGAGAGAGATTTCATGGGTCTTAGCTCAAAAGAATCATTATCTGGGGTGAAGGAGGAGATGAACAATGATATTGATGGGTGCAAAGACACAGGTTTCACAAAAGGTTCAGTGGTAAAATGGCCCTTCTTGAACAAAGTCTCTGCTCATCCGCATTTGATGTCTTTCAATGTTTCTCAAGATGATAAGACTAAAATGATGGGGTCTGATTCCATCACATCTGCTGGTTTGTTTGCCATCCCAAGTCTAGACAAGTTTGACTCTATTCATAAACGTGCTGCGGGTGAACTACAGAAATCTTTCAATCATGACGGACAAGGTGGCATTCATTTTTCCCTGACTCCATATCCTGTACAACATGATGTGAATTATGTGAATCGTCCTCATGATGTGAAGATGGTTTCGGTTTCCAATCAAGCAATTTCAGTTTCCCTGGGACATCCATTCCTAAAGAATCATTTTGTTACTGTTGGCCAGAATATGAACGGTGCTAATGTGAAGCAACCATTGCTTGGGGGAATACCTGTTACAGCGCCTCATTCAGTTCTTCCCATCGTCGGTGCTGTTGCTGGAACAACTGAATCATGTAACAGTGTGAAACCATCTGCACCTGCTCCTCAACTTACCATCTTCTATGCGGGAACTGTAAATGTCTTCCATGATATAACTCCTGAGAAGGCACAAGCTATCATGTTGTTGGCTGGGAATGGCTTATCTGCAGGTTCTAACATGGCACAGTCCAAAGTTCAGGCACTCGGCACGAAGTTGGCAGCAGGTGATAGTATGCCTGTGAGTCAACCCATAAATGTTCCACCCTGCTCTGGTCTTTCAAGTCCTTTATCTGTTTCTTCACATACTGGTGCCCAATCAGGGAGTGGCTCAAGTTGCAATGAAGAATTTCTTGCAGCTAAAACATCTGGAGGTCCCATCAACTCTGTTAGCAAAGTGGAGACTCCAAAAGTAGTTAATGCAACCACCATGTTAACATCAGCTGTGCCGCAGGCTCGAAAAGCATCCTTGGCTCGATTTTTGGAGAAGCGCAAGGAAAGGGTGATGAATTCAGCACCATATAACCTCAACAAGAAGTCTGAGGATGTTGCAATGCAGAATACAATGATTTCTAACATCTATGCAAGTACTGGTACTAATACGCTTTCAGCCAAGCAAGGATAG 1173 0.4348 MERDFMGLSSKESLSGVKEEMNNDIDGCKDTGFTKGSVVKWPFLNKVSAHPHLMSFNVSQDDKTKMMGSDSITSAGLFAIPSLDKFDSIHKRAAGELQKSFNHDGQGGIHFSLTPYPVQHDVNYVNRPHDVKMVSVSNQAISVSLGHPFLKNHFVTVGQNMNGANVKQPLLGGIPVTAPHSVLPIVGAVAGTTESCNSVKPSAPAPQLTIFYAGTVNVFHDITPEKAQAIMLLAGNGLSAGSNMAQSKVQALGTKLAAGDSMPVSQPINVPPCSGLSSPLSVSSHTGAQSGSGSSCNEEFLAAKTSGGPINSVSKVETPKVVNATTMLTSAVPQARKASLARFLEKRKERVMNSAPYNLNKKSEDVAMQNTMISNIYASTGTNTLSAKQG 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi652g00005 390 Pfam tify domain 204 235 IPR010399 -
Gabi652g00005 390 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 156 362 IPR040390 -
Gabi652g00005 390 SMART tify_2 201 236 IPR010399 -
Gabi652g00005 390 ProSiteProfiles Tify domain profile. 201 236 IPR010399 -
Gabi652g00005 390 Pfam Jas motif 333 357 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi652g00005 Gabi-Chr652 35756 39300 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi652g00005 39 363 Tify Gene Family AT3G17860 36.202 2.96e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gabi652g00005 tify 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi652g00005 K13464 - gmx:100807043 482.256