Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi652g00004 ATGGAGAGAGATTTCATGGGTCTTAGCTCAAAAGAATCATTATCTGGGGTGAAGGAGGAGATGAACAATGATATTGATGGGTGCAAAGACACAGGTTTCACAAAAGGTTCAGTGGTAAAATGGCCCTTCTTGAACAAAGTCTCTGCTCATCCGCATTTGATGTCTTTCAATGTTTCTCAAGATGATAAGACTAAAATGATGGGGTCTGATTCCATCACATCTGCTGGTTTGTTTGCCATCCCAAGTCTAGACAAGTTTGACTCTATTCATAAACGTGCTGCGGGTGAACTACAGAAATCTTTCAATCATGACGGACAAGGTGGCATTCATTTTTCCCTGACTCCATATCCTGTACAACATGATGTGAATTATGTGAATCGTCCTCATGATGTGAAGATGGTTTCGGTTTCCAATCAAGCAATTTCAGTTTCCCTGGGACATCCATTCCTAAAGAATCATTTTGTTACTGTTGGCCAGAATATGAACGGTGCTAATGTGAAGCAACCATTGCTTGGGGGAATACCTGTTACAGCGCCTCATTCAGTTCTTCCCATCGTCGGTGCTGTTGCTGGAACAACTGAATCATGTGTGAAACCATCTGCACCTGCTCCTCAACTTACCATCTTCTATGCGGGAACTGTAAATGTCTTCCATGATATAACTCCTGAGAAGGCACAAGCTATCATGTTGTTGGCTGGGAATGGCTTATCTGCAGGTTCTAACATGGCACAGTCCAAAGTTCAGGCACTCGGCACGAAGTTGGCAGCAGGTGATAGTATGCCTGTGAGTCAACCCATAAATGTTCCACCCTGCTCTGGTCTTTCAAGTCCTTTATCTGTTTCTTCACATACTGGTGCCCAATCAGGGAGTGGCTCAAGTTGCAATGAAGAATTTCTTGCAGCTAAAACATCTGGAGGTCCCATCAACTCTGTTAGCAAAGTGGAGACTCCAAAAGTAGTTAATGCAACCACCATGTTAACATCAGCTGTGCCGCAGGCTCGAAAAGCATCCTTGGCTCGATTTTTGGAGAAGCGCAAGGAAAGGGTGATGAATTCAGCACCATATAACCTCAACAAGAAGTCTGAGGATGTTGCAATGCAGAATACAATGATTTCTAACATCTATGCAAGTACTGGTACTAATACGCTTTCAGCCAAGCAAGGATAG 1167 0.4353 MERDFMGLSSKESLSGVKEEMNNDIDGCKDTGFTKGSVVKWPFLNKVSAHPHLMSFNVSQDDKTKMMGSDSITSAGLFAIPSLDKFDSIHKRAAGELQKSFNHDGQGGIHFSLTPYPVQHDVNYVNRPHDVKMVSVSNQAISVSLGHPFLKNHFVTVGQNMNGANVKQPLLGGIPVTAPHSVLPIVGAVAGTTESCVKPSAPAPQLTIFYAGTVNVFHDITPEKAQAIMLLAGNGLSAGSNMAQSKVQALGTKLAAGDSMPVSQPINVPPCSGLSSPLSVSSHTGAQSGSGSSCNEEFLAAKTSGGPINSVSKVETPKVVNATTMLTSAVPQARKASLARFLEKRKERVMNSAPYNLNKKSEDVAMQNTMISNIYASTGTNTLSAKQG 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi652g00004 388 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 153 360 IPR040390 -
Gabi652g00004 388 ProSiteProfiles Tify domain profile. 199 234 IPR010399 -
Gabi652g00004 388 Pfam tify domain 202 233 IPR010399 -
Gabi652g00004 388 Pfam Jas motif 331 355 IPR018467 -
Gabi652g00004 388 SMART tify_2 199 234 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi652g00004 Gabi-Chr652 35756 39300 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi652g00004 39 361 Tify Gene Family AT3G17860 36.202 5.06e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gabi652g00004 tify 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi652g00004 K13464 - gmx:100807043 473.396